Detail information of GWHGAAZE014719


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011073652.15.3373E-132PREDICTED: transcription factor bHLH18-like [Sesamum indicum]
Swissprottr|Q9T072|BH025_ARATH7E-64Transcription factor bHLH25
trEMBLtr|A0A068V9N7|A0A068V9N7_COFCA7E-119Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313|EMBL:CDP17179.1}
TAIR10AT4G37850.11E-53basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1736214417363725-
GWHAAZE00000004mRNA1736214417363725-
GWHAAZE00000004exon1736214417362361-
GWHAAZE00000004exon1736247517362852-
GWHAAZE00000004exon1736312017363496-
GWHAAZE00000004exon1736358717363725-
GWHAAZE00000004CDS1736358717363725-
GWHAAZE00000004CDS1736312017363496-
GWHAAZE00000004CDS1736247517362852-
GWHAAZE00000004CDS1736228717362361-
GWHAAZE00000004three_prime_UTR1736214417362286-
Transcript Sequence

Network for GWHGAAZE014719

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0264map00626 Naphthalene degradation
map00830 Retinol metabolism
map00625 Chloroalkane and chloroalkene degradation
map01220 Degradation of aromatic compounds
GO:0055114 oxidation-reduction process GOslim:biological_process
map00071 Fatty acid degradation
map00680 Methane metabolism
map00350 Tyrosine metabolism
map00982 Drug metabolism - cytochrome P450
map00980 Metabolism of xenobiotics by cytochrome P450
map00010 Glycolysis / Gluconeogenesis
CYTOCHROME_P536_Family CYTOCHROME_P536_Family
CYTOCHROME_P525_Family CYTOCHROME_P525_Family
map01110 Biosynthesis of secondary metabolites
map01200 Carbon metabolism
map00900 Terpenoid backbone biosynthesis
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GOslim:molecular_function
GO:0005506 iron ion binding GOslim:molecular_function
GO:0020037 heme binding GOslim:molecular_function
map01120 Microbial metabolism in diverse environments
GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity GOslim:molecular_function
GO:0070402 NADPH binding GOslim:molecular_function
GO:0016114 terpenoid biosynthetic process GOslim:biological_process
map01100 Metabolic pathways
map00902 Monoterpenoid biosynthesis


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH1451902.10E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.555
SRR3591706second leaf84.857
SRR3591707mature leaf11.665
SRR3591708Shoot apex75.840
SRR3591709Stem0.252
SRR3591710White floral bud0.795
SRR3591711White flower0.529
SRR3591712Green floral bud15.661
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 34.828
SRR8316896Juvenile bud stage 28.513
SRR8316897Juvenile bud stage 13.119
SRR8316894Third green stage 7.618
SRR8316900Third green stage 5.390
SRR8316901Third green stage 7.007
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 2.355
SRR8316903Complete white stage 0.152
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control7.872
SRR6706287Light intensity 50%7.537
SRR6706288Light intensity 20%7.331
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.713
CNS0095593Slightly white alabastrum(diploid) 215.788
CNS0095594Slightly white alabastrum(diploid) 311.633
CNS0095595Whole white alabastrum(diploid) 219.965
CNS0095596Whole white alabastrum(diploid) 34.313
CNS0095597Whole white alabastrum(diploid) 412.283
CNS0095598Silvery flower (diploied) 12.629
CNS0095599Silvery flower (diploied) 22.715
CNS0095600Silvery flower (diploied) 30.231
CNS0095601Golden flower (diploid) 10.763
CNS0095602Golden flower (diploid) 20.124
CNS0095603Golden flower (diploid) 30.044
CNS0095604Slightly white alabastrum(tetraploid) 111.909
CNS0095605Slightly white alabastrum(tetraploid) 218.386
CNS0095606Slightly white alabastrum(tetraploid) 350.436
CNS0095607Whole white alabastrum(tetraploid) 19.355
CNS0095608Whole white alabastrum(tetraploid) 22.989
CNS0095609Whole white alabastrum(tetraploid) 37.584
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.050
CNS0095612Silvery flower (tetraploid) 30.145
CNS0095613Golden flower (tetraploid) 10.043
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 139.433
CRR073298Stem 243.623
CRR073299Stem 333.081
CRR073300Leaf 111.985
CRR073301Leaf 28.672
CRR073302Leaf 35.009
CRR073303Juvenile bud 12.612
CRR073304Juvenile bud 20.089
CRR073305Juvenile bud 32.706
CRR073306Third green 10.000
CRR073307Third green 20.088
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 14.922
CRR073316Gold flowering 24.935
CRR073317Gold flowering 35.866
CRR073318Tawny withering 163.100
CRR073319Tawny withering 228.020
CRR073320Tawny withering 358.221