Gene detail

Detail information of GWHGAAZE014718

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011073652.1	7.9022E-127	PREDICTED: transcription factor bHLH18-like [Sesamum indicum]
Swissprot	tr\|Q9T072\|BH025_ARATH	9E-67	Transcription factor bHLH25
trEMBL	tr\|A0A068VEC0\|A0A068VEC0_COFCA	1E-119	Coffea canephora DH200=94 genomic scaffold, scaffold_198 {ECO:0000313\|EMBL:CDP18043.1}
TAIR10	AT4G37850.1	1E-55	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	17262677	17264427	-
GWHAAZE00000004	mRNA	17262677	17264427	-
GWHAAZE00000004	exon	17262677	17262757	-
GWHAAZE00000004	exon	17262883	17263257	-
GWHAAZE00000004	exon	17263828	17264427	-
GWHAAZE00000004	CDS	17263828	17264427	-
GWHAAZE00000004	CDS	17262883	17263257	-
GWHAAZE00000004	CDS	17262677	17262757	-

Transcript Sequence
>GWHTAAZE014732 ATGGAGGATCCAAACCCGTTCTTCATGGATCAATGCGACATAATGGACGCATTCGATGAAGAGTTCACCGCCACACTCGGCGACGACTTTCAAATCTCTCTCTCCCCTGAAAATAGCAACTCTTCCTCTTCAACTTTGATCCCAAGAAGCAGCTCCACCACAACCTTGTGTGTTTCCTCATCCATCCAACCGCCATCTCCTCCTTATACTACCCCGATTGAACGGCCCAAAAAGCACCGCAAGCCCAATAACTACAACTCGAGCACCACCAACCACACGACAAACTTTGATCACCAGTCCTCTTTGACTCCGATTATTCTCAACTTTGGGAACAATTCTAGCGAACCAGAGCGTGCTCAGCCAGGCCCAGTGGGAGCTATGAACCCTGAGGATGAGGCCGTGCTCGATGCTTTGGTTTCTCAGAGTGCGTTAGGGAACCATAATGAGGTGGCAAAAGGTGGTCAAGGGATGAAGAAGGCAAATGCACGTACTAGGCCTCCCTCGCAGACGTACGACCATATTATAGCTGAAAGGAAGAGGCGCGAGCAGCTCAGCCAGAGATTTGTTGCTCTGTCGGCCATTGTTCCCGGTCTCAAGAAGATGGATAAAACTTCTGTTCTTGGAGATGCAATCAAGTACCTAAAACAACTCCAAGAAAGAGTGAAGACACTAGAGGAACAAACCACAAAGCAAACAATGGAATCAGTGGTCCTTGTTAGGAAATCACAGATCTCAATTGAAGATGAGGGTTCTTCAGATGAGAATAATAGTCATGGTGGGAGCTCCAATGATCACCTCCCTGAAATCGAAGCAAGGATATCCGATAAGAGCGTTCTCATAAGAATCCACTGTGAGAAACGCAAAGGCATGCTCGTAAAAATACTCTCCGAGATCGAGAAGATGAATTTGGCCATTCTCAACACAAGCGCCTTGCCATTTGGAACTCTAGCTCTCGATGTCACCATAATTGCAGAGATGGAACAGGAATTCAACATGACATTAAAAGATATTGTTAGCAGTCTTCGATCAGCTGTGCGTGGTTACACTCGGACTTGA

Network for GWHGAAZE014718

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0091	Transcription factor MYB family Transcription factor MYB Transcription factor bHLH family Transcription factor bHLH

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	173	218	2.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.529
	SRR3591706	second leaf	51.785
	SRR3591707	mature leaf	5.761
	SRR3591708	Shoot apex	39.879
	SRR3591709	Stem	2.177
	SRR3591710	White floral bud	2.924
	SRR3591711	White flower	0.832
	SRR3591712	Green floral bud	6.522
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	34.142
	SRR8316896	Juvenile bud stage	34.218
	SRR8316897	Juvenile bud stage	18.133
	SRR8316894	Third green stage	12.777
	SRR8316900	Third green stage	12.454
	SRR8316901	Third green stage	11.938
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	10.683
	SRR8316903	Complete white stage	1.370
	SRR8316902	Silver flowering stage	0.135
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	11.893
	SRR6706287	Light intensity 50%	12.989
	SRR6706288	Light intensity 20%	10.025
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.755
	CNS0095593	Slightly white alabastrum(diploid) 2	17.660
	CNS0095594	Slightly white alabastrum(diploid) 3	21.304
	CNS0095595	Whole white alabastrum(diploid) 2	30.407
	CNS0095596	Whole white alabastrum(diploid) 3	11.918
	CNS0095597	Whole white alabastrum(diploid) 4	16.274
	CNS0095598	Silvery flower (diploied) 1	26.113
	CNS0095599	Silvery flower (diploied) 2	16.309
	CNS0095600	Silvery flower (diploied) 3	2.232
	CNS0095601	Golden flower (diploid) 1	14.426
	CNS0095602	Golden flower (diploid) 2	4.489
	CNS0095603	Golden flower (diploid) 3	5.927
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.980
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.220
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.372
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.800
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.928
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.328
	CNS0095610	Silvery flower (tetraploid) 1	0.102
	CNS0095611	Silvery flower (tetraploid) 2	3.702
	CNS0095612	Silvery flower (tetraploid) 3	3.096
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.095
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	27.679
	CRR073298	Stem 2	25.496
	CRR073299	Stem 3	35.129
	CRR073300	Leaf 1	5.512
	CRR073301	Leaf 2	6.123
	CRR073302	Leaf 3	6.234
	CRR073303	Juvenile bud 1	4.265
	CRR073304	Juvenile bud 2	0.445
	CRR073305	Juvenile bud 3	3.063
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.072
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.475
	CRR073316	Gold flowering 2	2.213
	CRR073317	Gold flowering 3	4.132
	CRR073318	Tawny withering 1	1.928
	CRR073319	Tawny withering 2	2.024
	CRR073320	Tawny withering 3	5.614