Gene detail

Detail information of GWHGAAZE014716

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007047665.1	8.16614E-87	Basic helix-loop-helix DNA-binding superfamily protein, putative [Theobroma cacao]
Swissprot	tr\|Q9T072\|BH025_ARATH	1E-55	Transcription factor bHLH25
trEMBL	tr\|A0A061DHY3\|A0A061DHY3_THECC	3E-87	Basic helix-loop-helix DNA-binding superfamily protein, putative {ECO:0000313\|EMBL:EOX91822.1}
TAIR10	AT4G37850.1	2E-30	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	17209130	17210593	-
GWHAAZE00000004	mRNA	17209130	17210593	-
GWHAAZE00000004	exon	17209130	17209195	-
GWHAAZE00000004	exon	17209548	17209922	-
GWHAAZE00000004	exon	17210069	17210593	-
GWHAAZE00000004	CDS	17210069	17210593	-
GWHAAZE00000004	CDS	17209548	17209922	-
GWHAAZE00000004	CDS	17209130	17209195	-

Transcript Sequence
>GWHTAAZE014730 ATGGAGGATTGCAACTATATGAATCACCTCCCAATGGGCTATCTAGAATTTGAAGCTCTTGATGAATTCAAACCACCACCTCCAAATTACAGAAACTCCTTACCCTCGCAGAGCTACATCTCTAATGTTACATCTATCGAAATTAACTCACCTACCAAGAAGATGAAGACAGACAGCAATTGGAATAATTTACCAAGTACCACTCGACACATTTCTCTAAAAAATTCGTCCTCCTCTTTGTCATCATCCCACCTTATTTCCTTCACCAACTCACATCATCCGCCTTGTGGAAATTTAGATTCCATTGTGGAGCCTAAGAATGAGGTAGTAATGTTTAATGACGATCATACGACCATATCGCCAACATACGCACCACAAGGTGGGCAGGGGATCAAGAGGGGTACGGGCCCACTGACTAGGAGTCCGTCTCATGCTTTGGATCACGTATTAGCTGAGAGAAAGAGGAGAGAGAGGCTTGCTGAGCGGATAATAGCTCTCTCTGCCATCATTCCTGGCCTAAAGAAGATGGACAAAGCTTCTGTACTAGGAGATGCAATCAAGTACTTGAAGCATCTTCAAGAACGAGTGAAACAGCTAGAGGAACAGGCCAAGAAGAAATCGGAGGAGGAATCAGTTGTTTTAGTGAACGAGTCTAATCTCTCTGCTGACGATGATTCGTCTTCGTGTGAAGAGAATTCTGGTGGGTGCTTCGAAGAATCGCGATCTGAAATAGAAGCTAGAGTTTCGGAAAATAATGTTCTTATTAGAGTCCACCGCGAGAAGAAAAAGGGGTTTGTATTGAAGATGATAAGAGAAATAGAGAAGCTTCATCTCAGTGTCATCAATAGCAGTGTCTTGCCTTTCGGGAATTACAAAATAGATATAACTATTGTTGCTCAGATGGATGCCGAATTCAGCCTGACAGTAAAGGATCTTGTGAGAAATCTGAGATTGGCTTTACTATAA

Network for GWHGAAZE014716

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	148	193	9.80E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.171
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.090
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.809
	SRR8316896	Juvenile bud stage	5.685
	SRR8316897	Juvenile bud stage	2.645
	SRR8316894	Third green stage	2.959
	SRR8316900	Third green stage	19.229
	SRR8316901	Third green stage	21.833
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.289
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.065
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	3.378
	SRR6706287	Light intensity 50%	3.139
	SRR6706288	Light intensity 20%	3.029
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.079
	CNS0095593	Slightly white alabastrum(diploid) 2	12.940
	CNS0095594	Slightly white alabastrum(diploid) 3	17.584
	CNS0095595	Whole white alabastrum(diploid) 2	26.065
	CNS0095596	Whole white alabastrum(diploid) 3	30.614
	CNS0095597	Whole white alabastrum(diploid) 4	34.640
	CNS0095598	Silvery flower (diploied) 1	0.044
	CNS0095599	Silvery flower (diploied) 2	0.086
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.335
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.706
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.709
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.426
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.238
	CNS0095608	Whole white alabastrum(tetraploid) 2	40.020
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.759
	CNS0095610	Silvery flower (tetraploid) 1	0.008
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.049
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.083
CRA001975	CRR073297	Stem 1	1.127
	CRR073298	Stem 2	1.738
	CRR073299	Stem 3	1.033
	CRR073300	Leaf 1	7.422
	CRR073301	Leaf 2	4.613
	CRR073302	Leaf 3	2.997
	CRR073303	Juvenile bud 1	4.810
	CRR073304	Juvenile bud 2	3.780
	CRR073305	Juvenile bud 3	0.121
	CRR073306	Third green 1	0.070
	CRR073307	Third green 2	0.100
	CRR073308	Third green 3	0.175
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.008
	CRR073312	Silver flowering 1	0.139
	CRR073313	Silver flowering 2	0.387
	CRR073314	Silver flowering 3	0.105
	CRR073315	Gold flowering 1	0.087
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.669
	CRR073318	Tawny withering 1	0.482
	CRR073319	Tawny withering 2	0.592
	CRR073320	Tawny withering 3	0.000