Gene detail

Detail information of GWHGAAZE014702

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007047635.1	1.4095E-117	Homeodomain-leucine zipper protein HD4 [Theobroma cacao]
Swissprot	tr\|P46604\|HAT22_ARATH	4E-97	Homeobox-leucine zipper protein HAT22
trEMBL	tr\|A0A061DHW3\|A0A061DHW3_THECC	5E-118	Homeodomain-leucine zipper protein HD4 {ECO:0000313\|EMBL:EOX91792.1}
TAIR10	AT4G37790.1	6E-79	Homeobox-leucine zipper protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16896897	16898577	+
GWHAAZE00000004	mRNA	16896897	16898577	+
GWHAAZE00000004	exon	16896897	16897388	+
GWHAAZE00000004	exon	16897490	16897569	+
GWHAAZE00000004	exon	16898036	16898577	+
GWHAAZE00000004	CDS	16896897	16897388	+
GWHAAZE00000004	CDS	16897490	16897569	+
GWHAAZE00000004	CDS	16898036	16898321	+
GWHAAZE00000004	three_prime_UTR	16898322	16898577	+

Transcript Sequence
>GWHTAAZE014716 ATGGGTCTCGACAACGTTTGTAACACTGGCCTCGTATTAGGCCTAGGTAATAATTATTCATCAGAAAATAATCCTGTTAAATCCGACGATCAGAAATCAAAGCCGTCGGTGAGCCTGAACTTGGACCACTTGTCCAAGCCAGCGGTTGGGTTCGAGCCGTCGTTGACTCTGGGTCTCTCCGGCGAGAGTTATGATCACGTGCCGGCTAAGACGGTGGATGGTTCTAATAATAATAATAAGGTTTGTAGTAAACAGAGTATGGGTGGTAATTTATATCGACAAGATAGCGGTGATGGTTCATCGTACTCGAATGTTAGTGTGAAGAGGGAGAGGGATATTAATGAAGAAGGGGAGACGGAGAGGGTTGTTTGTTCGAGGGTGAGCGATGAGGAAGATGAGGGGGTTATTAATGGAAGAAAGAAACTTAGGCTTACTAAAGCACAATCTGCTCTTCTTGAAGAAAGCTTTAAACAACACAGCACTCTCAACCCCAAACAAAAGCAAGAGTTAGCCAGGGAGCTAAAGCTAAGGCCTCGGCAAGTTGAAGTTTGGTTCCAGAACAGGAGAGCCAGGACAAAGCTGAAGCAAACTGAAGTGGACTGTGAGTACTTGAAGAAATGCTGTGAAACACTAACAGACGAGAACAGAAGATTACAGAAGGAGGTACAAGAACTCAAAGCACTAAAACTAGCCCAGCCCTTGTACATGCAGCTGCCAGCAGCAACCCTCACTATGTGCCCTTCTTGTGAGAGAATTGGGGACAAGAACTCCTCCAAAACCACCACCCCATTTACTACTATGGCGCCTTCAAAGCCACTTTTCTATAATCCTTTCTCCAATTCCTCTGCAGCTTGTTAATTTCATTCAATATATATATATATAGTTTGTTAATTAGTATTTGTAGAATCTAATATTATATGAAAAGTACGTACTACCCCCACAATCCCTACTCCCTTTTTTTTTAAGTTGAGGGCTTGTAATGAAATTGTAAGGTTTAGTATATATACTTTGATTTGTAGAAAAAACTAGGAATATTTACTAATCAGTGTTCCATTGGTTTTTATGTATTATGCTTGTAAAATTGTGAAGGAATATATATATATATATCAATGAA

Network for GWHGAAZE014702

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	139	193	1.80E-16
PF02183.19	HALZ	195	229	2.50E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.932
	SRR3591706	second leaf	8.257
	SRR3591707	mature leaf	20.326
	SRR3591708	Shoot apex	20.661
	SRR3591709	Stem	63.764
	SRR3591710	White floral bud	22.766
	SRR3591711	White flower	30.171
	SRR3591712	Green floral bud	16.606
	SRR3591713	Yellow flower	17.517
SRP173429	SRR8316895	Juvenile bud stage	23.607
	SRR8316896	Juvenile bud stage	28.005
	SRR8316897	Juvenile bud stage	9.911
	SRR8316894	Third green stage	8.299
	SRR8316900	Third green stage	13.187
	SRR8316901	Third green stage	14.598
	SRR8316898	Complete white stage	12.535
	SRR8316899	Complete white stage	35.093
	SRR8316903	Complete white stage	21.495
	SRR8316902	Silver flowering stage	12.611
	SRR8316904	Silver flowering stage	10.795
	SRR8316905	Silver flowering stage	8.995
	SRR8316906	Gold flowering stage	27.644
	SRR8316907	Gold flowering stage	17.996
	SRR8316908	Gold flowering stage	17.880
SRP132670	SRR6706286	Control	36.514
	SRR6706287	Light intensity 50%	26.966
	SRR6706288	Light intensity 20%	23.100
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.151
	CNS0095593	Slightly white alabastrum(diploid) 2	20.951
	CNS0095594	Slightly white alabastrum(diploid) 3	23.624
	CNS0095595	Whole white alabastrum(diploid) 2	15.058
	CNS0095596	Whole white alabastrum(diploid) 3	7.352
	CNS0095597	Whole white alabastrum(diploid) 4	14.441
	CNS0095598	Silvery flower (diploied) 1	25.274
	CNS0095599	Silvery flower (diploied) 2	22.879
	CNS0095600	Silvery flower (diploied) 3	32.043
	CNS0095601	Golden flower (diploid) 1	22.258
	CNS0095602	Golden flower (diploid) 2	30.258
	CNS0095603	Golden flower (diploid) 3	28.983
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.107
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.377
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.432
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.308
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.252
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.192
	CNS0095610	Silvery flower (tetraploid) 1	37.986
	CNS0095611	Silvery flower (tetraploid) 2	28.333
	CNS0095612	Silvery flower (tetraploid) 3	8.879
	CNS0095613	Golden flower (tetraploid) 1	14.489
	CNS0095614	Golden flower (tetraploid) 2	14.347
	CNS0095615	Golden flower (tetraploid) 3	19.468
CRA001975	CRR073297	Stem 1	49.114
	CRR073298	Stem 2	48.316
	CRR073299	Stem 3	55.863
	CRR073300	Leaf 1	37.528
	CRR073301	Leaf 2	37.719
	CRR073302	Leaf 3	30.403
	CRR073303	Juvenile bud 1	24.088
	CRR073304	Juvenile bud 2	32.343
	CRR073305	Juvenile bud 3	28.775
	CRR073306	Third green 1	57.478
	CRR073307	Third green 2	48.093
	CRR073308	Third green 3	40.045
	CRR073309	Second white 1	5.496
	CRR073310	Second white 2	6.323
	CRR073311	Second white 3	3.217
	CRR073312	Silver flowering 1	2.238
	CRR073313	Silver flowering 2	4.754
	CRR073314	Silver flowering 3	1.312
	CRR073315	Gold flowering 1	6.756
	CRR073316	Gold flowering 2	8.151
	CRR073317	Gold flowering 3	7.266
	CRR073318	Tawny withering 1	38.649
	CRR073319	Tawny withering 2	24.628
	CRR073320	Tawny withering 3	43.170