Gene detail

Detail information of GWHGAAZE014695

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010647487.1	2.897E-123	PREDICTED: transcription factor RAX3 [Vitis vinifera]
Swissprot	tr\|Q9M2Y9\|RAX3_ARATH	1E-83	Transcription factor RAX3
trEMBL	tr\|D7UEC5\|D7UEC5_VITVI	1E-123	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI41089.3}
TAIR10	AT5G65790.1	2E-68	myb domain protein 68

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16755443	16756796	-
GWHAAZE00000004	mRNA	16755443	16756796	-
GWHAAZE00000004	exon	16755443	16756199	-
GWHAAZE00000004	exon	16756310	16756439	-
GWHAAZE00000004	exon	16756661	16756796	-
GWHAAZE00000004	CDS	16756661	16756796	-
GWHAAZE00000004	CDS	16756310	16756439	-
GWHAAZE00000004	CDS	16755443	16756199	-

Transcript Sequence
>GWHTAAZE014709 ATGGGCAGAGCTCCTTGCTGTGACAAAGCCAACGTTAAGAAAGGTCCCTGGTCTCCCGAAGAAGATTCCAAACTCAAATCATATATCGAAAAACACGGTACCGGCGGCAACTGGATTGCCTTACCACAAAAAATAGGGCTTAGAAGGTGTGGGAAGAGTTGCAGGCTTAGATGGCTGAATTATCTGCGCCCGAATCTCAAGCATGGAGGGTTTTCAGAGGAAGAAGATAACATCATTTGCAGCCTCTACACGAGTATCGGAAGCAGGTGGTCTATTATTGCAGCGCAATTACCGGGGCGAACAGATAATGACATAAAGAACTATTGGAACACGAGGCTGAAGAAGAAGTTAATAGGCAAGCAACGGAAGGAACAACAGGCTCGACGGGCCAGCTTTCTGAAGCAGGACCTGAAGAGTGAGACTGATTATTTCATGTCAGTTCCTGATCAGGCAGTCAACCTAATCTATCCTTATTGGCCGGAACTTCCTGTCCCCGCCATGTCAGCTCCGAATCCGAGCCAAGATCCTCATGTCAAGGACCAAACATCTATCAAGAACTTGCTGGTCAAGCTAGGAGGACGATTTTCAAACGATCATCCACAACAAGAACAGCAGCAACAACACATCATTACTAGTAATTTTCAATACCCTTATGACCAATTATACGAAAATTCGACCAATTCCATCATCAATAACAATTGTTCTCAACTGGTCGATGGGGAAGGCCTAGATAGTTATTATCAAGATTTTAACAACTTTGCGACTGAAAACAATGATGATGTGTTTTATGGTAACGCGGAGCAATTAGGTGGACTGATAATGGATAGTTTGTATGGATTCGATCATCAAATGGCGATACATGGGAGTTCTGGTTCTACAGAAAGTAGTAGCTGGGGAGATATAAATTCTCTTATATGCGCTCCAGCTCCTGCTCCTGCTCCTTTGTACTCGAATTATGAAGAAGATGGCCGCAGCAGACAAGGGATGATGCTACAAAGCTACGCATTTGACACGTTTCAATAA

Network for GWHGAAZE014695

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	62	1.80E-14
PF00249.32	Myb_DNA-binding	69	111	9.30E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.993
	SRR3591706	second leaf	0.330
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.385
	SRR3591709	Stem	7.841
	SRR3591710	White floral bud	0.762
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.508
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.058
	SRR8316896	Juvenile bud stage	2.450
	SRR8316897	Juvenile bud stage	0.983
	SRR8316894	Third green stage	0.644
	SRR8316900	Third green stage	2.001
	SRR8316901	Third green stage	2.062
	SRR8316898	Complete white stage	0.807
	SRR8316899	Complete white stage	7.473
	SRR8316903	Complete white stage	1.127
	SRR8316902	Silver flowering stage	0.072
	SRR8316904	Silver flowering stage	0.680
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.078
	SRR8316907	Gold flowering stage	0.452
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	4.924
	SRR6706287	Light intensity 50%	3.974
	SRR6706288	Light intensity 20%	4.513
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.566
	CNS0095593	Slightly white alabastrum(diploid) 2	4.339
	CNS0095594	Slightly white alabastrum(diploid) 3	1.437
	CNS0095595	Whole white alabastrum(diploid) 2	1.441
	CNS0095596	Whole white alabastrum(diploid) 3	0.276
	CNS0095597	Whole white alabastrum(diploid) 4	2.302
	CNS0095598	Silvery flower (diploied) 1	1.145
	CNS0095599	Silvery flower (diploied) 2	2.694
	CNS0095600	Silvery flower (diploied) 3	1.275
	CNS0095601	Golden flower (diploid) 1	0.300
	CNS0095602	Golden flower (diploid) 2	0.273
	CNS0095603	Golden flower (diploid) 3	0.461
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.286
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.666
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.480
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.625
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.279
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.938
	CNS0095610	Silvery flower (tetraploid) 1	0.420
	CNS0095611	Silvery flower (tetraploid) 2	0.200
	CNS0095612	Silvery flower (tetraploid) 3	0.088
	CNS0095613	Golden flower (tetraploid) 1	0.151
	CNS0095614	Golden flower (tetraploid) 2	0.208
	CNS0095615	Golden flower (tetraploid) 3	0.031
CRA001975	CRR073297	Stem 1	4.733
	CRR073298	Stem 2	5.509
	CRR073299	Stem 3	6.865
	CRR073300	Leaf 1	4.354
	CRR073301	Leaf 2	5.100
	CRR073302	Leaf 3	1.943
	CRR073303	Juvenile bud 1	3.717
	CRR073304	Juvenile bud 2	1.075
	CRR073305	Juvenile bud 3	8.618
	CRR073306	Third green 1	0.142
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.764
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.144
	CRR073318	Tawny withering 1	6.160
	CRR073319	Tawny withering 2	7.041
	CRR073320	Tawny withering 3	10.103