Gene detail

Detail information of GWHGAAZE014685

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010645298.1	0	PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2 [Vitis vinifera]
Swissprot	tr\|Q38914\|ANT_ARATH	9E-158	AP2-like ethylene-responsive transcription factor ANT
trEMBL	tr\|F6I7I7\|F6I7I7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62905.1}
TAIR10	AT4G37750.1	3E-131	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16573037	16577002	+
GWHAAZE00000004	mRNA	16573037	16577002	+
GWHAAZE00000004	exon	16573037	16573463	+
GWHAAZE00000004	exon	16573577	16574228	+
GWHAAZE00000004	exon	16574447	16574529	+
GWHAAZE00000004	exon	16574781	16574869	+
GWHAAZE00000004	exon	16574952	16575025	+
GWHAAZE00000004	exon	16575108	16575158	+
GWHAAZE00000004	exon	16575258	16575334	+
GWHAAZE00000004	exon	16576395	16577002	+
GWHAAZE00000004	five_prime_UTR	16573037	16573150	+
GWHAAZE00000004	CDS	16573151	16573463	+
GWHAAZE00000004	CDS	16573577	16574228	+
GWHAAZE00000004	CDS	16574447	16574529	+
GWHAAZE00000004	CDS	16574781	16574869	+
GWHAAZE00000004	CDS	16574952	16575025	+
GWHAAZE00000004	CDS	16575108	16575158	+
GWHAAZE00000004	CDS	16575258	16575334	+
GWHAAZE00000004	CDS	16576395	16577002	+

Transcript Sequence
>GWHTAAZE014699 CAAAACAAAAGACCCCAGTTATATCAGAATGAAAGACTTATATCTATATGATTAGTTTATTAGTTTCCCAATGATTGAGTTGCCTTCCAGCAACTTAAAACTTGTGAAGAGAAAATGAAACCTATGAGTAGTAGTAGTAGTGATAACAACAATAACTGGTTGGGTTTCTCTCTATCTCCTCACATGAACAACAACAACAACATGGATGGTCCTTCACTCCCTCACCCAGCTCCCTCTACTCTTGTGTCTTCTACAACTTCAGTACCAGCAGGCTTCTATAATCTCCCTTCTTATTTCAACTACTCACCCGTTTACACTGGAGCTGAGGCTGAAAATGGTGGCTTCTCCTCTCTTTTATCTATGATGCCACTCAAATCTGACGGTTCTTTGTGTATGATGGAAACCATCACTAGATCACAACCTCAAGGAATGGTAATTCCAAATTCAACTCCAAAACTGGAGGATTTCTTTGGTGGTACAACAATGGGGACCCATCAATATGAAGCCAATGACAGAGAAGCTATGGCTCTAAGCTTGGACAGCATTTACTACAATCAAAACACAAACAATGAGACCAGTAGTCAAGATTTCATTAACCACTTTCACAACTCTCAAGTCCAAAATTACGCAAATTACTCTGCATTTAGGGGCCACGATCCAGTGTACCATCCGCCGCAAGAGGAAGCTAAAGAAACCCACATTGAAAATTCCAACCTTCAGCTACCAACAATTGGGGAAGATGAAATCACAAGCATGAAGAACTGGGTTTCAAGAAACTACCCAAATGATCATCATCCATTTGAGCAGATTGGCTGCATGAGTCAAAATGGGTGTGAGCCTAGTGGGTCTACTATGGATGGTGCTATTAGGTATGGGGATTTGCAGTCTCTAAGCTTATCAATGAGCCCTGGTTCTCAAACAAGCTGTGTTTCACGGCAAATCTCACCTGCAGTTACTGATTGTGTGACCATGGATACAAAGAAAAGAGGTTCTGAGAAAGTGGAACAGAAGCAGATTGTTCATAGGAAGTCTATTGATACATTTGGGCAGAGAACCTCACAGTATAGAGGTGTTACAAGGCATAGATGGACTGGTAGATATGAAGCCCATTTATGGGACAATAGCTGCAAGAAAGAAGGCCAGAGCAGGAAAGGAAGACAAGGGGGTTATGATATGGAAGAGAAAGCTGCACGAGCTTACGATTTAGCAGCACTCAAGTATTGGGGACCTTCTACTCATATTAATTTCTCGGTGGAAAATTATCGACAAGAACTTGAAGAGATGGAGAAGATGACTAGACAGGAATATGTTGCTCACTTGAGAAGGAAAAGTAGCGGCTTCTCTAGGGGAGCTTCAATTTACAGAGGAGTAACAAGACATCATCAACATGGCCGATGGCAAGCAAGGATCGGCCGAGTAGCGGGGAACAAGGACCTTTATCTAGGCACATTTAGCACTCAAGAGGAAGCCGCTGAGGCCTATGACGTAGCGGCAATCAAATTTCGTGGAGTGAATGCGGTAACCAACTTTGACATATCAAGGTACGATGTGGAACGTATAATGGCAAGCAACACGCTTCTTGCCGGAGAACTAGCCAGGAGAAACAAGGGGGTAGAATCCAATACTGACGTCTCTAACCAAATTGTGGAATCCACCATCTCAAAAGAGAACAATGGAAACATAGCTGACTGGAAAATGGTGGCAATGTATCAGTCCTCTCAACCTGATCAAAAACCAAGTGGTCTTGAAGATCATTTTCGGGCCCTGCCTTTCTCAATGGGGGCACAGCATTTGACCGATACAATGAGATCGGCTCAGGCAGGGGCAGAGGCAGTGGTGCACGCAAAAATGGGGAGCCACATGCCGAATGGTTATTCATTGGCGGCTACTTCGAGAGAAGGCAACTCTGATAAAAACAATAGCCTTCCAGTACTTATTACAGCACCTCCTTTGGCTTCCAAGTTTCTTGGCAATTCTACAAGTCCTATGACTTCATGGATCTCATCAGCCCAGCTGAGGCCTCATGCGCCACTTTTTGCTGCATGGGCAGATGCATCATAG

Network for GWHGAAZE014685

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	316	371	4.20E-10
PF00847.21	AP2	415	465	3.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.541
	SRR3591706	second leaf	2.915
	SRR3591707	mature leaf	0.529
	SRR3591708	Shoot apex	22.506
	SRR3591709	Stem	8.374
	SRR3591710	White floral bud	2.036
	SRR3591711	White flower	1.639
	SRR3591712	Green floral bud	1.040
	SRR3591713	Yellow flower	0.451
SRP173429	SRR8316895	Juvenile bud stage	3.414
	SRR8316896	Juvenile bud stage	2.232
	SRR8316897	Juvenile bud stage	0.864
	SRR8316894	Third green stage	0.845
	SRR8316900	Third green stage	0.109
	SRR8316901	Third green stage	0.233
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.979
	SRR8316903	Complete white stage	0.273
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.027
	SRR8316905	Silver flowering stage	0.033
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.433
	SRR6706287	Light intensity 50%	0.468
	SRR6706288	Light intensity 20%	0.445
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.798
	CNS0095593	Slightly white alabastrum(diploid) 2	1.322
	CNS0095594	Slightly white alabastrum(diploid) 3	1.802
	CNS0095595	Whole white alabastrum(diploid) 2	1.197
	CNS0095596	Whole white alabastrum(diploid) 3	0.227
	CNS0095597	Whole white alabastrum(diploid) 4	0.560
	CNS0095598	Silvery flower (diploied) 1	1.714
	CNS0095599	Silvery flower (diploied) 2	1.182
	CNS0095600	Silvery flower (diploied) 3	0.943
	CNS0095601	Golden flower (diploid) 1	1.423
	CNS0095602	Golden flower (diploid) 2	1.039
	CNS0095603	Golden flower (diploid) 3	1.204
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.523
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.529
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.152
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.026
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.208
	CNS0095610	Silvery flower (tetraploid) 1	0.075
	CNS0095611	Silvery flower (tetraploid) 2	0.334
	CNS0095612	Silvery flower (tetraploid) 3	0.219
	CNS0095613	Golden flower (tetraploid) 1	0.033
	CNS0095614	Golden flower (tetraploid) 2	0.446
	CNS0095615	Golden flower (tetraploid) 3	0.076
CRA001975	CRR073297	Stem 1	3.284
	CRR073298	Stem 2	3.802
	CRR073299	Stem 3	3.900
	CRR073300	Leaf 1	0.465
	CRR073301	Leaf 2	0.530
	CRR073302	Leaf 3	0.429
	CRR073303	Juvenile bud 1	0.094
	CRR073304	Juvenile bud 2	0.033
	CRR073305	Juvenile bud 3	0.224
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.093
	CRR073308	Third green 3	0.001
	CRR073309	Second white 1	0.022
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.027
	CRR073315	Gold flowering 1	0.218
	CRR073316	Gold flowering 2	0.416
	CRR073317	Gold flowering 3	0.858
	CRR073318	Tawny withering 1	9.611
	CRR073319	Tawny withering 2	5.676
	CRR073320	Tawny withering 3	14.099