Gene detail

Detail information of GWHGAAZE014683

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG26721.1	1.13742E-51	RNA-binding Musashi Rbp6 [Gossypium arboreum]
Swissprot	tr\|Q8W034\|RNP1_ARATH	6E-49	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|A0A061FF68\|A0A061FF68_THECC	2E-49	RNA-binding family protein, putative {ECO:0000313\|EMBL:EOY15656.1}
TAIR10	AT4G14300.1	1E-41	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16555249	16558786	+
GWHAAZE00000004	mRNA	16555249	16558786	+
GWHAAZE00000004	exon	16555249	16555470	+
GWHAAZE00000004	exon	16558484	16558786	+
GWHAAZE00000004	CDS	16555249	16555470	+
GWHAAZE00000004	CDS	16558484	16558786	+

Transcript Sequence
>GWHTAAZE014697 ATGGCAACCGTGTCTGGAAAGTTGTTTGTGGGAGGAATTTCACAGCCTACAAGCGCAGAGATACTGAGAGATCACTTTAGCAAATATGGAAAACTTAAAGAATATGAGGTTATTAGAGACAGAATCACTCGCCAAAGCAGGGGGTTCGGTTTCGTTGCATTCGCAGACCCATCTCTGGCCGATAGAGCCCTTGAAGAAGATCACATCATTCTTGGAAGAAAGGTAGAGGTGAGACTTGCTAAACCAAAAGAGGAATACTCAAACCAATGGCAATTGCAGAGGAATCAGACAAGCCAAATTGTGGGTTGCAATACTCATGTTAATAAAAGGAAAATATTTGTAGGTGGTTTACCACATAACTTGACAGATGGAGAATTGAAGAGTTACTTTGATAGTTTTGGTACTGTTGTGGACGCGGTTGTGATACATGACAAAGAGTATAACAAGCCTAGGGGATTCGGTTTTGTTACTTTTGATTCAAAGGAGGCTGTAGAGAGTGTCTTAAAAAGAGTTTTCACAAATTGA

Network for GWHGAAZE014683

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	8	72	1.20E-15
PF00076.23	RRM_1	112	169	2.90E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.258
	SRR3591710	White floral bud	0.150
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.304
SRP173429	SRR8316895	Juvenile bud stage	0.614
	SRR8316896	Juvenile bud stage	0.807
	SRR8316897	Juvenile bud stage	0.138
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.203
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.028
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.318
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.225
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.923
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.078
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.004
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.382
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.124
	CRR073298	Stem 2	0.685
	CRR073299	Stem 3	0.011
	CRR073300	Leaf 1	0.479
	CRR073301	Leaf 2	0.439
	CRR073302	Leaf 3	0.107
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.142
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.108
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.110
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.458
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.439