Gene detail

Detail information of GWHGAAZE014671

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007205266.1	0	hypothetical protein PRUPE_ppa006424mg [Prunus persica]
Swissprot	tr\|Q9SZG0\|HHP4_ARATH	0	Heptahelical transmembrane protein 4
trEMBL	tr\|M5WI59\|M5WI59_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ06465.1}
TAIR10	AT4G37680.2	4E-177	heptahelical protein 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16375731	16379100	+
GWHAAZE00000004	mRNA	16375731	16379100	+
GWHAAZE00000004	exon	16375731	16375984	+
GWHAAZE00000004	exon	16377547	16377874	+
GWHAAZE00000004	exon	16378447	16379100	+
GWHAAZE00000004	CDS	16375731	16375984	+
GWHAAZE00000004	CDS	16377547	16377874	+
GWHAAZE00000004	CDS	16378447	16379100	+

Transcript Sequence
>GWHTAAZE014685 ATGGGTAAAAATCAGCAAATTTGTGAAGAAATGTCTGATTTAAATGAGAATAATCAAAATGAGTGTGGTCCAAAGGAAGGGAAGGGGAAGAGGTTGTGGAAGAAGGTGAAGTACCAGCTGGTGGAATACCACTCGTTGCCTGGTTATTTGAAGGACAATGAGTTTATTGTAGGTCATTATCGGTCCGAATGGCCGATTAAGCAGATTTTAATAAGCATTTTTACCCTTCATAACGAGACCCTCAATGTTTGGACACACTTGATAGGGTTCTTCCTCTTCCTTTCCCTAACAATCTATACAGCAATGAAGATTCCAAATGTTGTGGATCTCCACAACTTCCAACATTTTCCGGAAGTGCTGAGAAAAGCCGACCTTTACAAACTGCAAGCAGACCTTCGGACTTGTCTTCCATCCTTATCCAATAACATGCCTGATTTTCACAAACTTCGGGATGAGTTGAAAACTGCATTCCCTTCTACTGATTTGCTGCCATCGCTATCAAAATGGCATATTGTAGAACACCTCACCAACTGTTTGCCTGAGCGCTTCTCCCATAGCAACAGTACTGATGTTTGTGTTCTTCGTAGCATGAAGGAGGATCTCGCCAACATATTAGCACCGTTGATAATGAGGCCGATAACTCGGTGGCCATTCTTTGCCTTCTTAGGCGGGGCCATGTTTTGCTTACTAGCAAGCAGCACGTGCCACTTGCTCTCATGCCACTCTAAACGTCTATCATACATCATGCTGAGGCTCGACTATGCTGGAATAGCGGCCCTAATCTCAACTTCGTTTTACCCGCCTGTCTACTATTCCTTCATGTGCTATCCCTTCTTCTGCAATCTCTACATGGGATTCATAACTCTCTTGGGAATTGCCACAATCATGGGTTCCCTTCTCCCGGTTTTCGAAAGACCCGAATATCGTAGTATTCGAGCATCTTTATTCTTTGGGATGGGCTTATCCGGGGTTGCGCCTATCCTTCACAAGCTTATCTTATTCTGGCACCAGCCTGAGGCACTGCATACAACTGCGTATGAAGTCTTGATGGGGGTTCTGTATGGGATCGGAGCCCTAGTATACGCGACACGGATCCCAGAGCGGTGGATGCCAGGGAAGTTCGACATTGCTGGGCACAGCCACCAGCTTTTTCATGTGCTGGTAGTGGCCGGGGCTTACACGCATTACCGTGCTGGGCTAGTTTATCTCAAATGGCGGGACCTCGAAGGGTGCTAA

Network for GWHGAAZE014671

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03006.21	HlyIII	74	396	5.00E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07297	ADIPOR	AMPK signaling pathway	map04152
		Adipocytokine signaling pathway	map04920
		Longevity regulating pathway	map04211

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.749
	SRR3591706	second leaf	13.320
	SRR3591707	mature leaf	17.670
	SRR3591708	Shoot apex	9.945
	SRR3591709	Stem	50.400
	SRR3591710	White floral bud	60.016
	SRR3591711	White flower	97.811
	SRR3591712	Green floral bud	50.385
	SRR3591713	Yellow flower	94.929
SRP173429	SRR8316895	Juvenile bud stage	17.272
	SRR8316896	Juvenile bud stage	24.784
	SRR8316897	Juvenile bud stage	11.601
	SRR8316894	Third green stage	17.485
	SRR8316900	Third green stage	70.142
	SRR8316901	Third green stage	64.975
	SRR8316898	Complete white stage	39.591
	SRR8316899	Complete white stage	74.053
	SRR8316903	Complete white stage	52.046
	SRR8316902	Silver flowering stage	52.396
	SRR8316904	Silver flowering stage	72.699
	SRR8316905	Silver flowering stage	33.661
	SRR8316906	Gold flowering stage	70.666
	SRR8316907	Gold flowering stage	81.334
	SRR8316908	Gold flowering stage	92.079
SRP132670	SRR6706286	Control	64.736
	SRR6706287	Light intensity 50%	65.389
	SRR6706288	Light intensity 20%	74.921
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.507
	CNS0095593	Slightly white alabastrum(diploid) 2	29.539
	CNS0095594	Slightly white alabastrum(diploid) 3	29.878
	CNS0095595	Whole white alabastrum(diploid) 2	46.137
	CNS0095596	Whole white alabastrum(diploid) 3	58.710
	CNS0095597	Whole white alabastrum(diploid) 4	56.736
	CNS0095598	Silvery flower (diploied) 1	48.223
	CNS0095599	Silvery flower (diploied) 2	39.652
	CNS0095600	Silvery flower (diploied) 3	199.350
	CNS0095601	Golden flower (diploid) 1	50.640
	CNS0095602	Golden flower (diploid) 2	174.234
	CNS0095603	Golden flower (diploid) 3	173.673
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.509
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.707
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.229
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.391
	CNS0095608	Whole white alabastrum(tetraploid) 2	40.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.974
	CNS0095610	Silvery flower (tetraploid) 1	119.025
	CNS0095611	Silvery flower (tetraploid) 2	156.633
	CNS0095612	Silvery flower (tetraploid) 3	108.559
	CNS0095613	Golden flower (tetraploid) 1	92.215
	CNS0095614	Golden flower (tetraploid) 2	106.384
	CNS0095615	Golden flower (tetraploid) 3	113.748
CRA001975	CRR073297	Stem 1	38.371
	CRR073298	Stem 2	34.806
	CRR073299	Stem 3	40.370
	CRR073300	Leaf 1	42.881
	CRR073301	Leaf 2	41.982
	CRR073302	Leaf 3	46.195
	CRR073303	Juvenile bud 1	44.834
	CRR073304	Juvenile bud 2	45.153
	CRR073305	Juvenile bud 3	39.207
	CRR073306	Third green 1	19.521
	CRR073307	Third green 2	20.488
	CRR073308	Third green 3	18.693
	CRR073309	Second white 1	47.044
	CRR073310	Second white 2	30.070
	CRR073311	Second white 3	27.863
	CRR073312	Silver flowering 1	39.569
	CRR073313	Silver flowering 2	56.570
	CRR073314	Silver flowering 3	62.526
	CRR073315	Gold flowering 1	13.911
	CRR073316	Gold flowering 2	16.493
	CRR073317	Gold flowering 3	13.413
	CRR073318	Tawny withering 1	44.965
	CRR073319	Tawny withering 2	35.219
	CRR073320	Tawny withering 3	33.764