Detail information of GWHGAAZE014665


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008341091.11.6009E-78PREDICTED: protein SHORT-ROOT [Malus domestica]
Swissprottr|Q9SZF7|SHR_ARATH3E-65Protein SHORT-ROOT
trEMBLtr|M5VXS8|M5VXS8_PRUPE6E-78Uncharacterized protein {ECO:0000313|EMBL:EMJ06257.1}
TAIR10AT4G37650.12E-55GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1630224916302701+
GWHAAZE00000004mRNA1630224916302701+
GWHAAZE00000004exon1630224916302701+
GWHAAZE00000004CDS1630224916302701+
Transcript Sequence

Network for GWHGAAZE014665

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS21492.30E-34
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.671
SRR3591706second leaf14.695
SRR3591707mature leaf7.556
SRR3591708Shoot apex24.394
SRR3591709Stem10.551
SRR3591710White floral bud2.724
SRR3591711White flower2.472
SRR3591712Green floral bud12.564
SRR3591713Yellow flower0.352
SRP173429 SRR8316895Juvenile bud stage 3.440
SRR8316896Juvenile bud stage 2.835
SRR8316897Juvenile bud stage 0.330
SRR8316894Third green stage 2.255
SRR8316900Third green stage 4.390
SRR8316901Third green stage 3.063
SRR8316898Complete white stage 0.122
SRR8316899Complete white stage 5.130
SRR8316903Complete white stage 0.803
SRR8316902Silver flowering stage0.655
SRR8316904Silver flowering stage0.203
SRR8316905Silver flowering stage0.213
SRR8316906Gold flowering stage 0.752
SRR8316907Gold flowering stage 0.800
SRR8316908Gold flowering stage 0.273
SRP132670SRR6706286Control4.697
SRR6706287Light intensity 50%4.657
SRR6706288Light intensity 20%4.097
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.678
CNS0095593Slightly white alabastrum(diploid) 210.268
CNS0095594Slightly white alabastrum(diploid) 35.981
CNS0095595Whole white alabastrum(diploid) 26.394
CNS0095596Whole white alabastrum(diploid) 35.195
CNS0095597Whole white alabastrum(diploid) 44.937
CNS0095598Silvery flower (diploied) 13.150
CNS0095599Silvery flower (diploied) 20.855
CNS0095600Silvery flower (diploied) 30.267
CNS0095601Golden flower (diploid) 10.903
CNS0095602Golden flower (diploid) 20.402
CNS0095603Golden flower (diploid) 30.525
CNS0095604Slightly white alabastrum(tetraploid) 17.199
CNS0095605Slightly white alabastrum(tetraploid) 29.706
CNS0095606Slightly white alabastrum(tetraploid) 318.352
CNS0095607Whole white alabastrum(tetraploid) 13.334
CNS0095608Whole white alabastrum(tetraploid) 22.263
CNS0095609Whole white alabastrum(tetraploid) 36.442
CNS0095610Silvery flower (tetraploid) 13.513
CNS0095611Silvery flower (tetraploid) 21.197
CNS0095612Silvery flower (tetraploid) 31.509
CNS0095613Golden flower (tetraploid) 12.834
CNS0095614Golden flower (tetraploid) 21.166
CNS0095615Golden flower (tetraploid) 30.705
CRA001975CRR073297Stem 18.140
CRR073298Stem 27.164
CRR073299Stem 311.689
CRR073300Leaf 14.468
CRR073301Leaf 23.744
CRR073302Leaf 31.947
CRR073303Juvenile bud 15.731
CRR073304Juvenile bud 22.107
CRR073305Juvenile bud 34.113
CRR073306Third green 10.295
CRR073307Third green 21.047
CRR073308Third green 30.381
CRR073309Second white 10.000
CRR073310Second white 20.171
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.226
CRR073314Silver flowering 30.000
CRR073315Gold flowering 14.113
CRR073316Gold flowering 24.639
CRR073317Gold flowering 32.556
CRR073318Tawny withering 116.547
CRR073319Tawny withering 25.686
CRR073320Tawny withering 317.853