Gene detail

Detail information of GWHGAAZE014663

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009786346.1	2.27096E-96	PREDICTED: adenylyl-sulfate kinase 3-like [Nicotiana sylvestris]
Swissprot	tr\|O49204\|KAPS_CATRO	4E-87	Adenylyl-sulfate kinase, chloroplastic (Precursor)
trEMBL	tr\|K4B6Q1\|K4B6Q1_SOLLC	1E-94	Adenylyl-sulfate kinase {ECO:0000256\|RuleBase:RU004347}
TAIR10	AT5G67520.1	2E-67	adenosine-5'-phosphosulfate (APS) kinase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16291805	16295046	+
GWHAAZE00000004	mRNA	16291805	16295046	+
GWHAAZE00000004	exon	16291805	16292039	+
GWHAAZE00000004	exon	16292381	16292521	+
GWHAAZE00000004	exon	16294400	16294507	+
GWHAAZE00000004	exon	16294645	16294763	+
GWHAAZE00000004	exon	16294918	16295046	+
GWHAAZE00000004	CDS	16291805	16292039	+
GWHAAZE00000004	CDS	16292381	16292521	+
GWHAAZE00000004	CDS	16294400	16294507	+
GWHAAZE00000004	CDS	16294645	16294763	+
GWHAAZE00000004	CDS	16294918	16295046	+

Transcript Sequence
>GWHTAAZE014677 GGTAACCGATTTTTGATTCGTTGTTCTTCGACGGAATTTGACTCCCCGGAGTCGGATTATCCGGCGAAGCTAGGGTTTGTGAAGTTTTCGGAGTCTATTTTTAGAGATAAAAGGTTGGAGCTCGTCGGTGCGGTGGCGAAATCGAACTTTTTGGCACCAGTCAAAGCAATGGAGGCTTCTAGAACATTCGATTGCAATGGCGATGCATTGATTAACGACTCTGATGATTGCTCTGGTTCGAATCTCCTCCAGAAATCTGTTAAGGGAAAGTCCGCGAATATTGTTTGGCATAAATGCTCTGTAGAGAAAGTTGATCGGCAAGAGCTGCTTAAGCAAAAAGGTTGTGTCATATGGATTACGGGTCTAAGTGGTTCAGGAAAGAGCACCTTGGCTTGTTCTTTAGGTCGGGCCCTGCATTCTAGAGGAAAGCTGACCTACATCCTAGATGGTGATAATGTCCGTCATGGTCTTAACAGTGACCTTAGGGAGGTAGCAAAGCTCTTTGCAGACGCTGGAGTAATTTGCATTGCCAGTTTGATATCTCCTTACAGGAAGGACCGCGATGCCTGCCGTGCTATATTGCCTAAAGGAGATTTCATTGAGGTGTTTATGGATGTGCCTCTGCAAGTGTGCGAGGCAAGGGACCCTAAAGGCTTGTACAAGCTTGCAAGAGCTGGAAAGATCAAAGGTAGATTGCTTGTTTCTATTCTCCCTTTTCCGATTATCACTTGA

Network for GWHGAAZE014663

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01583.21	APS_kinase	113	230	4.50E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00860	cysC	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Sulfur metabolism	map00920
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0000103	biological_process	sulfate assimilation
GO:0004020	molecular_function	adenylylsulfate kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.965
	SRR3591706	second leaf	24.811
	SRR3591707	mature leaf	19.302
	SRR3591708	Shoot apex	31.549
	SRR3591709	Stem	37.822
	SRR3591710	White floral bud	76.163
	SRR3591711	White flower	21.291
	SRR3591712	Green floral bud	45.355
	SRR3591713	Yellow flower	14.317
SRP173429	SRR8316895	Juvenile bud stage	27.987
	SRR8316896	Juvenile bud stage	39.510
	SRR8316897	Juvenile bud stage	21.171
	SRR8316894	Third green stage	14.351
	SRR8316900	Third green stage	39.948
	SRR8316901	Third green stage	41.104
	SRR8316898	Complete white stage	16.769
	SRR8316899	Complete white stage	43.447
	SRR8316903	Complete white stage	29.091
	SRR8316902	Silver flowering stage	16.381
	SRR8316904	Silver flowering stage	22.122
	SRR8316905	Silver flowering stage	10.005
	SRR8316906	Gold flowering stage	33.812
	SRR8316907	Gold flowering stage	27.014
	SRR8316908	Gold flowering stage	28.433
SRP132670	SRR6706286	Control	28.334
	SRR6706287	Light intensity 50%	31.440
	SRR6706288	Light intensity 20%	36.634
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.974
	CNS0095593	Slightly white alabastrum(diploid) 2	29.525
	CNS0095594	Slightly white alabastrum(diploid) 3	29.820
	CNS0095595	Whole white alabastrum(diploid) 2	31.669
	CNS0095596	Whole white alabastrum(diploid) 3	33.045
	CNS0095597	Whole white alabastrum(diploid) 4	27.908
	CNS0095598	Silvery flower (diploied) 1	28.411
	CNS0095599	Silvery flower (diploied) 2	29.580
	CNS0095600	Silvery flower (diploied) 3	20.204
	CNS0095601	Golden flower (diploid) 1	26.105
	CNS0095602	Golden flower (diploid) 2	19.740
	CNS0095603	Golden flower (diploid) 3	23.329
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.900
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.233
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.165
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.644
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.310
	CNS0095610	Silvery flower (tetraploid) 1	31.866
	CNS0095611	Silvery flower (tetraploid) 2	26.012
	CNS0095612	Silvery flower (tetraploid) 3	42.475
	CNS0095613	Golden flower (tetraploid) 1	22.842
	CNS0095614	Golden flower (tetraploid) 2	27.928
	CNS0095615	Golden flower (tetraploid) 3	28.356
CRA001975	CRR073297	Stem 1	40.974
	CRR073298	Stem 2	30.959
	CRR073299	Stem 3	21.293
	CRR073300	Leaf 1	42.759
	CRR073301	Leaf 2	48.979
	CRR073302	Leaf 3	36.966
	CRR073303	Juvenile bud 1	28.378
	CRR073304	Juvenile bud 2	30.477
	CRR073305	Juvenile bud 3	23.867
	CRR073306	Third green 1	32.887
	CRR073307	Third green 2	35.781
	CRR073308	Third green 3	32.902
	CRR073309	Second white 1	17.711
	CRR073310	Second white 2	17.981
	CRR073311	Second white 3	13.873
	CRR073312	Silver flowering 1	15.124
	CRR073313	Silver flowering 2	18.135
	CRR073314	Silver flowering 3	16.030
	CRR073315	Gold flowering 1	14.299
	CRR073316	Gold flowering 2	16.728
	CRR073317	Gold flowering 3	12.982
	CRR073318	Tawny withering 1	27.125
	CRR073319	Tawny withering 2	29.514
	CRR073320	Tawny withering 3	28.999