Gene detail

Detail information of GWHGAAZE014662

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02601.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M2W8\|Y3990_ARATH	4E-122	BTB/POZ domain-containing protein At3g49900
trEMBL	tr\|A0A068U252\|A0A068U252_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02601.1}
TAIR10	AT3G49900.2	2E-91	Phototropic-responsive NPH3 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16262742	16267591	+
GWHAAZE00000004	mRNA	16262742	16267591	+
GWHAAZE00000004	exon	16262742	16262908	+
GWHAAZE00000004	exon	16263229	16263298	+
GWHAAZE00000004	exon	16263726	16264244	+
GWHAAZE00000004	exon	16266779	16267591	+
GWHAAZE00000004	CDS	16262742	16262908	+
GWHAAZE00000004	CDS	16263229	16263298	+
GWHAAZE00000004	CDS	16263726	16264244	+
GWHAAZE00000004	CDS	16266779	16267591	+

Transcript Sequence
>GWHTAAZE014676 GGAAAAGAAAAGGCAGAGAGCTCCATGGAAGAAATGAGGGGCTGGAAAAATTTGGGCACAGTAGAAACCATCTATGAGGAAGAAGATGAAGAATCCTCATCTACCCTTTCTCTCTCTACAATCTCCTCCTCTCCTCCAATACCCCTCCATTCCAGAGTTCGGGCTTGGTCCTTGGCTACAGGATGTGACACAGATGGAACGATACATGTTCAGGGTTCATGTTTCCACTTGCACAAGCATCCTCTTATTTCAAGGAGCGGCTATTTGAAACGCCACTTAACCGAATCCTCAGAAATAACGCTCTCCCCGCCGTTAAACATAACGCCCGAAACATTCTCCCTCGTAGCCGACTTCTGTTACGGCTCCCACCTCGTCGTAACGCCCCTTAACATCGCTGCTCTCCGAACGGCAGCCGAAATGTTAGAAATGACGGAAACTAACGGCAATGGCGACGAGAACTTACGTCAAAAGACGGAGGCTTACTTCCGTCGGGCGGTCACCGTTAACAGAGAGTACGCGTCAACGGTGCTCCGTTCGTGCCTGTCGTCGCTTCCGGAAGCGGAAACGACGGCGTTTCTTATGAGTAGATGTATTGAGGCGTTGAGTTTGGCGGGTGACGGTGACGACATTATGAATTGTCTGGGTGATGTTAGAACTGTACGGCCCAAGGATTTTCAATTAATCGTGGAGTCCATGCGCAGGCGGATGACTGGGAGTCACGACCTTCTGTATAAAATCGTTGACCTTTACCTCAAGCAATCTTTTTAATTTATTATTATATTTCTATAATGTAAATAATTAACACATCAATTAATACAGGAACACAATGGGAAAATATCAGAGGAGGAGAAAACCCGAATATGCAACTACATAGATTGCACCACTCTCTCCCCTCAACTCCTCATGCACGCCGTTCAAAACCCCAAAATGCCCCTCAGGTTCATAGTCCAAGCCATGTTCCTCGAGCAGCTCAACACCCGTCGCTCCCTCTTCTCTGCTGCCGCCACCCACCTCAACACCACCACCTCCCGCCACAAGAACCACCAACCCAAGACCCCCCATGATAACATCACCCTCGGTGCCATTCTCCAGCGTGACGCCGCCCTCCGCCAGGTGGCCGAGCTGCAAGCCACCATGCACGCCACCAGCTCCCGCGTCCAGGCCTTGGAGAAAGAGCTCATTGGCATGAGACAAGTTTTGGATGATCCTGCGATAAATGGATCGGATCCGGGTCGGTCTGCGAGCTTCCGGTTCAGTTCAGAAGGGAAGGTTGAGAGGGGAGAGAGGGGTTCGGTCTCGTCGGGGAGTTTTCGGGGTTTTGGGAGGAAGGAGAGGACAAAAGCGTCTTTTTACACCCAAGGGGTTAGCGATGGGAATTCGAAGGTTGAGAGGAAATTTGGGAGGAGGGTTTTGGATGGATTGAAGAGTGTTTTTAAGGTGTCGAATTTTGGAAATGAGAAAAATTGTGAGAGGAAAGTGGATGGAAATGGAAATGGAAATGGAAATGGAGACGTAATTGTGATCAGGAAGGATTTACGTTTTGATGGGTTGTCTCCTTCTTTAGTCTAG

Network for GWHGAAZE014662

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0085	Protein Kinases RLK-Pelle_LRR-II family Protein Kinases RLK-Pelle_LRR-II map04016 MAPK signaling pathway - plant map04626 Plant-pathogen interaction map04075 Plant hormone signal transduction Transcription factor TRAF family Transcription factor TRAF GO:0006468 protein phosphorylation GOslim:biological_process GO:0004674 protein serine/threonine kinase activity GOslim:molecular_function GO:0005524 ATP binding GOslim:molecular_function GO:0004672 protein kinase activity GOslim:molecular_function
CFinderModule0260	Transcription factor TRAF family Transcription factor TRAF

Module ID

Function Annotation

CFinderModule0085

Protein Kinases RLK-Pelle_LRR-II family Protein Kinases RLK-Pelle_LRR-II
map04016 MAPK signaling pathway - plant
map04626 Plant-pathogen interaction
map04075 Plant hormone signal transduction
Transcription factor TRAF family Transcription factor TRAF
GO:0006468 protein phosphorylation GOslim:biological_process
GO:0004674 protein serine/threonine kinase activity GOslim:molecular_function
GO:0005524 ATP binding GOslim:molecular_function
GO:0004672 protein kinase activity GOslim:molecular_function

CFinderModule0260

Transcription factor TRAF family Transcription factor TRAF

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.32	BTB	63	146	2.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.398
	SRR3591706	second leaf	1.233
	SRR3591707	mature leaf	0.085
	SRR3591708	Shoot apex	6.603
	SRR3591709	Stem	1.585
	SRR3591710	White floral bud	5.749
	SRR3591711	White flower	1.600
	SRR3591712	Green floral bud	8.508
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	11.663
	SRR8316896	Juvenile bud stage	17.465
	SRR8316897	Juvenile bud stage	4.872
	SRR8316894	Third green stage	5.251
	SRR8316900	Third green stage	19.914
	SRR8316901	Third green stage	23.129
	SRR8316898	Complete white stage	5.053
	SRR8316899	Complete white stage	15.384
	SRR8316903	Complete white stage	10.318
	SRR8316902	Silver flowering stage	2.111
	SRR8316904	Silver flowering stage	2.131
	SRR8316905	Silver flowering stage	0.617
	SRR8316906	Gold flowering stage	0.888
	SRR8316907	Gold flowering stage	0.714
	SRR8316908	Gold flowering stage	0.501
SRP132670	SRR6706286	Control	21.294
	SRR6706287	Light intensity 50%	22.414
	SRR6706288	Light intensity 20%	26.678
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.631
	CNS0095593	Slightly white alabastrum(diploid) 2	6.979
	CNS0095594	Slightly white alabastrum(diploid) 3	7.831
	CNS0095595	Whole white alabastrum(diploid) 2	7.663
	CNS0095596	Whole white alabastrum(diploid) 3	7.338
	CNS0095597	Whole white alabastrum(diploid) 4	5.219
	CNS0095598	Silvery flower (diploied) 1	5.410
	CNS0095599	Silvery flower (diploied) 2	5.614
	CNS0095600	Silvery flower (diploied) 3	6.780
	CNS0095601	Golden flower (diploid) 1	8.511
	CNS0095602	Golden flower (diploid) 2	4.542
	CNS0095603	Golden flower (diploid) 3	4.372
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.031
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.566
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.239
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.435
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.481
	CNS0095610	Silvery flower (tetraploid) 1	10.598
	CNS0095611	Silvery flower (tetraploid) 2	15.805
	CNS0095612	Silvery flower (tetraploid) 3	23.795
	CNS0095613	Golden flower (tetraploid) 1	2.950
	CNS0095614	Golden flower (tetraploid) 2	3.002
	CNS0095615	Golden flower (tetraploid) 3	1.338
CRA001975	CRR073297	Stem 1	31.682
	CRR073298	Stem 2	31.108
	CRR073299	Stem 3	26.239
	CRR073300	Leaf 1	35.194
	CRR073301	Leaf 2	32.920
	CRR073302	Leaf 3	25.145
	CRR073303	Juvenile bud 1	19.590
	CRR073304	Juvenile bud 2	28.376
	CRR073305	Juvenile bud 3	25.199
	CRR073306	Third green 1	8.826
	CRR073307	Third green 2	3.695
	CRR073308	Third green 3	7.787
	CRR073309	Second white 1	2.422
	CRR073310	Second white 2	2.029
	CRR073311	Second white 3	0.846
	CRR073312	Silver flowering 1	0.109
	CRR073313	Silver flowering 2	0.140
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.117
	CRR073316	Gold flowering 2	0.320
	CRR073317	Gold flowering 3	0.098
	CRR073318	Tawny withering 1	7.418
	CRR073319	Tawny withering 2	3.652
	CRR073320	Tawny withering 3	11.464