Gene detail

Detail information of GWHGAAZE014660

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009615970.1	1.1333E-155	PREDICTED: mitochondrial outer membrane protein porin 2-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FJX3\|VDAC2_ARATH	9E-128	Mitochondrial outer membrane protein porin 2
trEMBL	tr\|Q38HV8\|Q38HV8_SOLTU	5E-151	POM30-like protein {ECO:0000313\|EMBL:ABB16970.1}
TAIR10	AT5G67500.1	5E-98	voltage dependent anion channel 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	16252755	16256080	+
GWHAAZE00000004	mRNA	16252755	16256080	+
GWHAAZE00000004	exon	16252755	16252820	+
GWHAAZE00000004	exon	16254417	16254527	+
GWHAAZE00000004	exon	16254618	16254704	+
GWHAAZE00000004	exon	16254805	16255013	+
GWHAAZE00000004	exon	16255774	16256080	+
GWHAAZE00000004	CDS	16252755	16252820	+
GWHAAZE00000004	CDS	16254417	16254527	+
GWHAAZE00000004	CDS	16254618	16254704	+
GWHAAZE00000004	CDS	16254805	16255013	+
GWHAAZE00000004	CDS	16255774	16256080	+

Transcript Sequence
>GWHTAAZE014674 CTGCTGACGAGAGACTATATCTCGGAGCAGAAATTTTCCGTTTCCACTTACAGTGATACCGGAGTGGCACTTACATCAACTGCAGTGAAGAAAGGAGGGCTCTCAACTGGAGACGTGGCAGCACAATATAAATACAAGAATACTCTAATTGATGTCAAATGTGATACAGACTCAAATGTCTCAACTACTTTAACATTCACTGATATTGTCCCATCAACAAAGACTATTGCTTCAGTTAAACTGCCTGATTATAACACTGGCAAGCTCGAGGTTCAGTACTTCCATCATCATGCAACTGTCACTACAGCCATCACTCATAATCAATCCCCAGGAATTGACCTTTCTGCTACCATTGGTACAACAACATTTGCTCTTGGTGCAGAGGCTGGTTATGAGCCTTCTTCTGCTAAGTTGACAAAGTATACTGCTGGCATCTCTGTTACAAAACCAGATTCCTGTGCTTCAATAGTTTTGGGCGACAAAGGGGACACTATAAAGGCATCGTATGTCCACCATTTGGATGTATCCAAGAAGAGTGCTGCTGTCGGGGAGATCACTAGGAGGTTCTCTACAAATGAAAACACATTTACAGTTGGGGGTTGTTTTGCAGTTGATAACCTAACACTAGTGAAAGCAAAGCTCAACAACCACGGGAAGCTTGGGGCCATTTTGCAGCACGAGCTCATACCAAAATCAGTTTTGACTATTGCCAGTGAGTTTGACACCAAGGCCTTGGATAAGACCCCAAGATTCGGTGTGGCTCTTGCTCTTAAACCTTGA

Network for GWHGAAZE014660

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01459.23	Porin_3	1	252	1.20E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15040	VDAC2	Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Ferroptosis	map04216
		Necroptosis	map04217
		Cellular senescence	map04218
		NOD-like receptor signaling pathway	map04621
		Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0005741	cellular_component	mitochondrial outer membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	131.782
	SRR3591706	second leaf	67.996
	SRR3591707	mature leaf	44.081
	SRR3591708	Shoot apex	76.842
	SRR3591709	Stem	88.737
	SRR3591710	White floral bud	78.772
	SRR3591711	White flower	80.523
	SRR3591712	Green floral bud	143.244
	SRR3591713	Yellow flower	83.705
SRP173429	SRR8316895	Juvenile bud stage	62.229
	SRR8316896	Juvenile bud stage	85.066
	SRR8316897	Juvenile bud stage	48.654
	SRR8316894	Third green stage	40.949
	SRR8316900	Third green stage	162.342
	SRR8316901	Third green stage	140.965
	SRR8316898	Complete white stage	49.129
	SRR8316899	Complete white stage	108.630
	SRR8316903	Complete white stage	55.290
	SRR8316902	Silver flowering stage	55.429
	SRR8316904	Silver flowering stage	68.941
	SRR8316905	Silver flowering stage	28.109
	SRR8316906	Gold flowering stage	100.296
	SRR8316907	Gold flowering stage	105.923
	SRR8316908	Gold flowering stage	122.376
SRP132670	SRR6706286	Control	124.576
	SRR6706287	Light intensity 50%	145.367
	SRR6706288	Light intensity 20%	149.930
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	101.126
	CNS0095593	Slightly white alabastrum(diploid) 2	92.944
	CNS0095594	Slightly white alabastrum(diploid) 3	92.604
	CNS0095595	Whole white alabastrum(diploid) 2	108.904
	CNS0095596	Whole white alabastrum(diploid) 3	133.773
	CNS0095597	Whole white alabastrum(diploid) 4	106.902
	CNS0095598	Silvery flower (diploied) 1	57.477
	CNS0095599	Silvery flower (diploied) 2	48.275
	CNS0095600	Silvery flower (diploied) 3	85.686
	CNS0095601	Golden flower (diploid) 1	44.280
	CNS0095602	Golden flower (diploid) 2	73.304
	CNS0095603	Golden flower (diploid) 3	74.191
	CNS0095604	Slightly white alabastrum(tetraploid) 1	126.212
	CNS0095605	Slightly white alabastrum(tetraploid) 2	126.608
	CNS0095606	Slightly white alabastrum(tetraploid) 3	100.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	132.687
	CNS0095608	Whole white alabastrum(tetraploid) 2	138.388
	CNS0095609	Whole white alabastrum(tetraploid) 3	143.429
	CNS0095610	Silvery flower (tetraploid) 1	88.282
	CNS0095611	Silvery flower (tetraploid) 2	85.021
	CNS0095612	Silvery flower (tetraploid) 3	72.784
	CNS0095613	Golden flower (tetraploid) 1	62.733
	CNS0095614	Golden flower (tetraploid) 2	87.581
	CNS0095615	Golden flower (tetraploid) 3	71.511
CRA001975	CRR073297	Stem 1	111.633
	CRR073298	Stem 2	92.493
	CRR073299	Stem 3	108.738
	CRR073300	Leaf 1	108.326
	CRR073301	Leaf 2	120.592
	CRR073302	Leaf 3	150.292
	CRR073303	Juvenile bud 1	165.827
	CRR073304	Juvenile bud 2	159.231
	CRR073305	Juvenile bud 3	117.990
	CRR073306	Third green 1	80.060
	CRR073307	Third green 2	77.400
	CRR073308	Third green 3	63.449
	CRR073309	Second white 1	145.118
	CRR073310	Second white 2	80.494
	CRR073311	Second white 3	77.329
	CRR073312	Silver flowering 1	103.228
	CRR073313	Silver flowering 2	107.035
	CRR073314	Silver flowering 3	77.402
	CRR073315	Gold flowering 1	49.682
	CRR073316	Gold flowering 2	47.949
	CRR073317	Gold flowering 3	42.039
	CRR073318	Tawny withering 1	100.119
	CRR073319	Tawny withering 2	88.990
	CRR073320	Tawny withering 3	114.496