Gene detail

Detail information of GWHGAAZE014629

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006380687.1	9.5924E-154	hypothetical protein POPTR_0007s10500g [Populus trichocarpa]
Swissprot	tr\|C0LGS3\|Y4372_ARATH	8E-118	Probable LRR receptor-like serine/threonine-protein kinase At4g37250 (Precursor)
trEMBL	tr\|U5G885\|U5G885_POPTR	4E-154	Uncharacterized protein {ECO:0000313\|EMBL:ERP58484.1}
TAIR10	AT5G67280.1	5E-104	receptor-like kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	15607955	15611295	-
GWHAAZE00000004	mRNA	15607955	15611295	-
GWHAAZE00000004	exon	15610852	15611295	-
GWHAAZE00000004	exon	15607955	15608619	-
GWHAAZE00000004	five_prime_UTR	15611072	15611295	-
GWHAAZE00000004	CDS	15610852	15611071	-
GWHAAZE00000004	CDS	15607955	15608619	-

Transcript Sequence
>GWHTAAZE014643 GTCATGGGCATGTCTTTTAAAGCGAAAAAACCACGAGGAAGAGTCGACTGAATCTAGTAGCACCGACGACGAAGAAGAAGCGCAAAAGGGTCGCGTCGGAACCGGTCCCGCAAGCACAAAAAGGGTCGGGTTCTCTGGTGACAGTTGATGGAGAGAAAGAGCTTGAATTAGAGAGTTTGTTAAAGGCTTCGGCTTATATATTGGGGGCATCGGGTTCGAGTATAATGTATAAAGCTGTGCTTGAAGATGGGTCGACGTTCGCCGTCCGGCGGATTGGAGAGAGTGGGGTGGAGAGGTTCAGGGATTTCGAGAACCAGGTTCGGGTCATATCCAAATTGGTGCACCCGAATTTGGTCCGGATCCGGGGATTCTATTGGGGGGTTGATGAGAAGCTTGTTATTTACGATTTCGTCCCCAATGGCAGCCTCGTTAACGCACGTTACAGAAAAGTGGGCTCATCACCATGCCCTCTACCTTGGGAAGTTCGGCTCAAAATAGCGAAAGGTGTAGCTCGGGGGCTGGCATTCATTCACGATAAGAAGCATGTTCACGCGAATCTGAAGCCTAGTAACATCCTATTGGAATCTGATATGGAGCCAAAAATTGGCGATTTTGGACTTGAAAGGCTTGTAACAGGTGAAAATAGCTCCAAGGCTGGTGCATCGGTCCGAAATTTTGGTAGCAAGAGGTCAACGGGCTCTCGTGATAGCTTTCACGATGTTGGACCGGCGTTCAACCCAAGCCCGAGCCCAAGCTCATTGGGTGGCGTATCGCCTTATTATGCGCCTGAGTCCCTTAGGAGCCTCAAGCCCAACCCGAAATGGGATGTGTACTCTTTTGGTGTATTGTTTCTTGAATTGTTGACTGGAAAGGTGGTTACTAATTCGGACGAGTTTGGGGTGGAGGATAAGAGCCGAGTGTTGAGGATGGCTGACGTAGCGATACGTTCTGAAATGGAGGGGAGAGAAGATGCCTTGTTGGCACTCTTGAAATTAGGATATAGTTGTATTTCTTTAGTGCCGCAAAATAGACCACCTATGAAAGAGGTGGTTCAAATTCTTGAGAAGTTTCCCTCTTCTTATTCGTCATTCAATTATTATGGTCCGTAG

Network for GWHGAAZE014629

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	2	277	5.50E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.464
	SRR3591706	second leaf	4.865
	SRR3591707	mature leaf	2.333
	SRR3591708	Shoot apex	6.182
	SRR3591709	Stem	12.989
	SRR3591710	White floral bud	21.607
	SRR3591711	White flower	17.376
	SRR3591712	Green floral bud	5.221
	SRR3591713	Yellow flower	8.090
SRP173429	SRR8316895	Juvenile bud stage	5.909
	SRR8316896	Juvenile bud stage	5.048
	SRR8316897	Juvenile bud stage	1.915
	SRR8316894	Third green stage	2.082
	SRR8316900	Third green stage	4.815
	SRR8316901	Third green stage	5.256
	SRR8316898	Complete white stage	5.515
	SRR8316899	Complete white stage	11.311
	SRR8316903	Complete white stage	9.940
	SRR8316902	Silver flowering stage	5.458
	SRR8316904	Silver flowering stage	6.362
	SRR8316905	Silver flowering stage	2.533
	SRR8316906	Gold flowering stage	6.519
	SRR8316907	Gold flowering stage	7.773
	SRR8316908	Gold flowering stage	5.207
SRP132670	SRR6706286	Control	4.646
	SRR6706287	Light intensity 50%	5.342
	SRR6706288	Light intensity 20%	4.675
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.556
	CNS0095593	Slightly white alabastrum(diploid) 2	4.852
	CNS0095594	Slightly white alabastrum(diploid) 3	5.547
	CNS0095595	Whole white alabastrum(diploid) 2	5.083
	CNS0095596	Whole white alabastrum(diploid) 3	3.097
	CNS0095597	Whole white alabastrum(diploid) 4	5.816
	CNS0095598	Silvery flower (diploied) 1	11.337
	CNS0095599	Silvery flower (diploied) 2	8.654
	CNS0095600	Silvery flower (diploied) 3	9.847
	CNS0095601	Golden flower (diploid) 1	9.959
	CNS0095602	Golden flower (diploid) 2	10.904
	CNS0095603	Golden flower (diploid) 3	11.422
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.844
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.387
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.052
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.735
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.561
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.929
	CNS0095610	Silvery flower (tetraploid) 1	11.278
	CNS0095611	Silvery flower (tetraploid) 2	10.457
	CNS0095612	Silvery flower (tetraploid) 3	27.900
	CNS0095613	Golden flower (tetraploid) 1	4.880
	CNS0095614	Golden flower (tetraploid) 2	6.097
	CNS0095615	Golden flower (tetraploid) 3	3.393
CRA001975	CRR073297	Stem 1	9.938
	CRR073298	Stem 2	8.092
	CRR073299	Stem 3	9.876
	CRR073300	Leaf 1	12.391
	CRR073301	Leaf 2	13.020
	CRR073302	Leaf 3	7.575
	CRR073303	Juvenile bud 1	13.112
	CRR073304	Juvenile bud 2	13.371
	CRR073305	Juvenile bud 3	16.831
	CRR073306	Third green 1	104.237
	CRR073307	Third green 2	112.199
	CRR073308	Third green 3	98.737
	CRR073309	Second white 1	49.316
	CRR073310	Second white 2	21.677
	CRR073311	Second white 3	16.393
	CRR073312	Silver flowering 1	11.344
	CRR073313	Silver flowering 2	14.263
	CRR073314	Silver flowering 3	8.087
	CRR073315	Gold flowering 1	2.647
	CRR073316	Gold flowering 2	2.460
	CRR073317	Gold flowering 3	2.811
	CRR073318	Tawny withering 1	17.875
	CRR073319	Tawny withering 2	16.822
	CRR073320	Tawny withering 3	10.502