Gene detail

Detail information of GWHGAAZE014628

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAE80325.1	3.2808E-158	cyclin D3-2 [Camellia sinensis]
Swissprot	tr\|Q9FGQ7\|CCD32_ARATH	5E-120	Cyclin-D3-2
trEMBL	tr\|Q2ABE6\|Q2ABE6_CAMSI	1E-158	Cyclin D3-2 {ECO:0000313\|EMBL:BAE80325.1}
TAIR10	AT5G67260.1	2E-91	CYCLIN D3;2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	15591897	15593466	+
GWHAAZE00000004	mRNA	15591897	15593466	+
GWHAAZE00000004	exon	15591897	15592358	+
GWHAAZE00000004	exon	15592451	15592652	+
GWHAAZE00000004	exon	15592917	15593047	+
GWHAAZE00000004	exon	15593185	15593466	+
GWHAAZE00000004	CDS	15591897	15592358	+
GWHAAZE00000004	CDS	15592451	15592652	+
GWHAAZE00000004	CDS	15592917	15593047	+
GWHAAZE00000004	CDS	15593185	15593466	+

Transcript Sequence
>GWHTAAZE014642 ATGTCCTCAAAGAATAAACAAACCCATGTCAAAAACCCCTCTTTTCTTCTCCAGGATGACGATGGTCTCTATTGTGAAGAGGAAGATCTTGGTTTCTGTGAGGAAGTGAGGGAGAACTGTAACCAAACTCTCGAAGAACATGACCTTTTTTGGGAAGATGATGAGCTTCTCTCTCTTTTATCTAAGGAAAAGCAGACCCATTTGAGTAATACAGATTTGGGTACTCATGGGTCTTTAAGGGGGATTAGAAAGGATGCCATTGATTGGATTTTAAGGGTTGGTGCTCATTATGGTTTCACTGCCATTACTGCTATTTTGGCTGCTAATTACTTTGATAGGTTCATTTCAAGTCTCTGCTTTCAAAAGGGTAAACCATGGATGAGTCAACTAGCTGCTGTTGCTTGCCTTTCTCTTGCTGCTAAGGTTGAGGAGATTCAAGTTCCTCTTCTTGTGGACTTACAAGTTGAGGAAGCGAGGTTTTTGTTTGAGGCCAGTACTATTCAGAAAATGGAGCTTTTGGTGCTCTCTACTCTTCAGTGGAAGATGAATCCAGTGACCCCACTTTCATTTCTGGATCACATTATAAGGAGGTTTGGATTGAAGACCCACCCGCATTGGGAGTTTCAGAGGAGGTGTGAGCGCCTACTTCTCTCTGTCATCACTGATTCAAGGTCTGCCTGTTATCTTCCATCTGTAATAGCAACTGCAGTAATGTTTCTTGTTATCAAGGAGGTTGAGCCCTGTAATGCTTTGGATTATCAGAATCAACTTATGGATATCCTTAAGATAAGCAAGGAGAAAATAGTGGAATGCTATAAACTCATCCTTAAACTATCGGACAACAACGCTCACCAGCAATACCAACCCACCAAGCGCAAGTATCAATGCATTCCCGCTAGTCCTAATGGTGTAATGGACATGAATTTCAGTCGTGATAATTCTAATGATTCTTGGGCTGTGGCATCAGTCTCTTCTTCACCAGAACCTTTGTTTAAAAGGAGCAGATCTCAAGATCAGCAGATGAGATTGGCTCCAATAAACCGTGTGTCTGTTGGTTTACTTTGCAACCCTCATTGA

Network for GWHGAAZE014628

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.24	Cyclin_N	63	183	1.90E-25
PF02984.20	Cyclin_C	185	295	1.70E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14505	CYCD3	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.012
	SRR3591706	second leaf	10.115
	SRR3591707	mature leaf	0.860
	SRR3591708	Shoot apex	65.213
	SRR3591709	Stem	9.251
	SRR3591710	White floral bud	4.549
	SRR3591711	White flower	1.484
	SRR3591712	Green floral bud	14.193
	SRR3591713	Yellow flower	0.253
SRP173429	SRR8316895	Juvenile bud stage	35.911
	SRR8316896	Juvenile bud stage	32.902
	SRR8316897	Juvenile bud stage	15.501
	SRR8316894	Third green stage	12.484
	SRR8316900	Third green stage	28.605
	SRR8316901	Third green stage	23.776
	SRR8316898	Complete white stage	3.103
	SRR8316899	Complete white stage	18.278
	SRR8316903	Complete white stage	4.163
	SRR8316902	Silver flowering stage	1.864
	SRR8316904	Silver flowering stage	3.081
	SRR8316905	Silver flowering stage	1.752
	SRR8316906	Gold flowering stage	2.699
	SRR8316907	Gold flowering stage	2.111
	SRR8316908	Gold flowering stage	0.884
SRP132670	SRR6706286	Control	12.673
	SRR6706287	Light intensity 50%	13.350
	SRR6706288	Light intensity 20%	16.054
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.626
	CNS0095593	Slightly white alabastrum(diploid) 2	23.848
	CNS0095594	Slightly white alabastrum(diploid) 3	19.808
	CNS0095595	Whole white alabastrum(diploid) 2	14.779
	CNS0095596	Whole white alabastrum(diploid) 3	16.093
	CNS0095597	Whole white alabastrum(diploid) 4	8.810
	CNS0095598	Silvery flower (diploied) 1	6.058
	CNS0095599	Silvery flower (diploied) 2	6.552
	CNS0095600	Silvery flower (diploied) 3	4.309
	CNS0095601	Golden flower (diploid) 1	3.892
	CNS0095602	Golden flower (diploid) 2	3.407
	CNS0095603	Golden flower (diploid) 3	2.691
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.849
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.124
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.884
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.999
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.354
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.783
	CNS0095610	Silvery flower (tetraploid) 1	0.210
	CNS0095611	Silvery flower (tetraploid) 2	1.810
	CNS0095612	Silvery flower (tetraploid) 3	0.857
	CNS0095613	Golden flower (tetraploid) 1	0.274
	CNS0095614	Golden flower (tetraploid) 2	0.084
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	41.118
	CRR073298	Stem 2	36.108
	CRR073299	Stem 3	34.101
	CRR073300	Leaf 1	21.224
	CRR073301	Leaf 2	17.188
	CRR073302	Leaf 3	22.257
	CRR073303	Juvenile bud 1	15.355
	CRR073304	Juvenile bud 2	8.190
	CRR073305	Juvenile bud 3	15.522
	CRR073306	Third green 1	5.710
	CRR073307	Third green 2	4.482
	CRR073308	Third green 3	4.193
	CRR073309	Second white 1	1.717
	CRR073310	Second white 2	1.420
	CRR073311	Second white 3	1.038
	CRR073312	Silver flowering 1	0.354
	CRR073313	Silver flowering 2	1.008
	CRR073314	Silver flowering 3	0.275
	CRR073315	Gold flowering 1	0.367
	CRR073316	Gold flowering 2	1.105
	CRR073317	Gold flowering 3	0.532
	CRR073318	Tawny withering 1	4.056
	CRR073319	Tawny withering 2	3.307
	CRR073320	Tawny withering 3	3.438