Gene detail

Detail information of GWHGAAZE014619

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002283167.1	PREDICTED: probable inactive receptor kinase At5g67200 [Vitis vinifera]
Swissprot	tr\|Q93Y06\|Y5720_ARATH	Probable inactive receptor kinase At5g67200 (Precursor)
trEMBL	tr\|F6H4H3\|F6H4H3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47045.1}
TAIR10	AT5G67200.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	15492401	15498739	-
GWHAAZE00000004	mRNA	15492401	15498739	-
GWHAAZE00000004	exon	15497335	15498739	-
GWHAAZE00000004	exon	15492401	15492963	-
GWHAAZE00000004	CDS	15497335	15498739	-
GWHAAZE00000004	CDS	15492401	15492963	-

Transcript Sequence
>GWHTAAZE014633 ATGCATATACTACTACTACTACTATTCGTCTCTCTCATTCTCTCTCTACCGACCTCTGCCACCGCCACCCAGTTTCCGGTTAACATACCACTACCCACCGACGCCGTCGCTCTTCTCTCATTCAAGTCCAAATCCGACCTAGACAACAAGCTCCTCTATACCCTTAATGAGCGCTTCGACTACTGTCAGTGGCAAGGTGTGAAATGCGTTCAAGGCCGAGTCGTCCGTTTCGTCCTCCAAGGCTTCGGCCTTCGTGGACTCCTCGCTCCCAACACCTTAACTTCCCTCGACCAGCTCCGAGTCGTAAGTCTGCGCAACAACTCGCTTGCCGGTCCGATTCCAGACCTCGGCGGACTCCCCAACCTCAGGACCCTTTTTCTCGACCACAACTTCTTCTCCGGAACCTTCCCGCCTTCGTTACCTCTACTTCACCGTCTAATAAACCTCGATCTCTCTCACAACAACCTCTCCGGTCATATCCCGTCGGAGGTGAATGCTTTAGACCGACTGAACTACTTACGACTCGAATGGAACCACTTCAATGGCACAATTCCCCCGCTGAATCAGTCTACGCTGGAGGTCTTCAATGTCTCAGGCAACAACTTTAGCGGACCAATCCCGGTCACGCCGACTATGATGAAATTCGGTATTTCGTCGTTTTTTATGAACCCTAACCTTTGCGGAGAGATTTTGAACAAAGTATGCCGTTCGAATTCTCCGTTTTTCGATTCCCCCTCCAGCACCGCTTCACCGCCGACGCCGCTACTTCAGAACGCACAGTCGCAAGGAGTGGTTCTATCTCCGCCGTCTAAAAAGAAGCACAAGTCTCTCGGCGTAGTCCTAGGTTTTGTAATCGGAGTACTGATTCTAATCGCAGCCATACTATGCCTCTTCGCATTTTTCAAGAGGCGAAGGGATCAAAATGAAAATCAAATCGAATCAAAATCAGCAATGTTCAACGACGAAGCCGTAAACAATGATTCTACAGAAACTTCTTCAAACGTAATACAGCTTGTGAATACTGAACTAGAAGTTATTCACGAGAAGAAATCGCAAGTACCTCAAAGGCGCGATAAGAGCGGGAATTTGATTTTCTGTACGGGCGAAACGCCTTTCTGTAATCTAGAGCAGTTAATGCGAGCTTCGGCGGAGTTGCTAGGGAGGGGTACGATTGGTACTACGTACAAAGCTGTTATGGACAATCAATTGATCGTGTCTGTTAAAAGGCTCGACGCCAGCAAGACGGCGATAACCACCGGCGAAGAGTTTGAGAGGCACATGGAAGCTGTCGGAGGGTTACGTCATCCGAATTTGGTCTCGGTTAGGGCTTACTTTCAGGCTAAACACGAGAGGCTGATTATTTATGATTATCAACCTAATGGTAGTCTCTTCAATCTCATTCACGGTTCAAGATCAACAAGGGCAAAACCACTTCACTGGACATCCTGCTTAAAGATATCAGAAGATTTGGCTATGGGCCTTTCCTACATTCACCAAGCATCAAGGCTCATTCATGGCAACCTAAAATCCTCCAATGTCCTCCTTGGTCCGGACTTCGAGGCCTGCCTCACCGACTACTGCCTCTCCGTCCTTGCAGACACTACTTCTTCAAATGACGACCCCGATTCTGCGGGCTACAGAGCACCCGAGTTACGCAAGTCCAGCAGCCGAGCCACCCCCAAGTCTGACGTGTATGCATTTGGGGTCCTCTTGTTAGAGCTTTTGACAGGTAAGCCACCGTCTCAGCATCCGTTCATCATGCCTGCTGATATGCCGGAATGGGTCCGGGCAATGAGGGACGCTGATGATGGGGAAGATGACCGGCTTGGATTGCTCGTTGAGGTTGCTGGGGTTTGTAGCTTGACGTCACCGGAGCAAAGGCCGGGAATGAGGCAAGTGTTGAAGATGATACAGGAAGTAAAGGAGAGTGCGATGATGGAGGATCATGCGAGGAATGGATACGTATGA

Network for GWHGAAZE014619

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	383	583	3.30E-32

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.823
	SRR3591706	second leaf	14.425
	SRR3591707	mature leaf	10.031
	SRR3591708	Shoot apex	13.409
	SRR3591709	Stem	16.624
	SRR3591710	White floral bud	5.467
	SRR3591711	White flower	2.028
	SRR3591712	Green floral bud	9.106
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	7.901
	SRR8316896	Juvenile bud stage	4.890
	SRR8316897	Juvenile bud stage	3.039
	SRR8316894	Third green stage	2.640
	SRR8316900	Third green stage	5.602
	SRR8316901	Third green stage	6.789
	SRR8316898	Complete white stage	0.610
	SRR8316899	Complete white stage	11.624
	SRR8316903	Complete white stage	1.260
	SRR8316902	Silver flowering stage	0.237
	SRR8316904	Silver flowering stage	0.612
	SRR8316905	Silver flowering stage	0.140
	SRR8316906	Gold flowering stage	0.005
	SRR8316907	Gold flowering stage	0.041
	SRR8316908	Gold flowering stage	0.284
SRP132670	SRR6706286	Control	8.667
	SRR6706287	Light intensity 50%	8.825
	SRR6706288	Light intensity 20%	8.049
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.266
	CNS0095593	Slightly white alabastrum(diploid) 2	5.778
	CNS0095594	Slightly white alabastrum(diploid) 3	5.096
	CNS0095595	Whole white alabastrum(diploid) 2	7.177
	CNS0095596	Whole white alabastrum(diploid) 3	4.196
	CNS0095597	Whole white alabastrum(diploid) 4	5.583
	CNS0095598	Silvery flower (diploied) 1	7.318
	CNS0095599	Silvery flower (diploied) 2	3.903
	CNS0095600	Silvery flower (diploied) 3	2.372
	CNS0095601	Golden flower (diploid) 1	3.960
	CNS0095602	Golden flower (diploid) 2	3.868
	CNS0095603	Golden flower (diploid) 3	3.473
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.688
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.230
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.674
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.792
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.351
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.493
	CNS0095610	Silvery flower (tetraploid) 1	0.533
	CNS0095611	Silvery flower (tetraploid) 2	1.846
	CNS0095612	Silvery flower (tetraploid) 3	0.925
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.614
	CNS0095615	Golden flower (tetraploid) 3	0.115
CRA001975	CRR073297	Stem 1	19.403
	CRR073298	Stem 2	16.990
	CRR073299	Stem 3	17.807
	CRR073300	Leaf 1	18.234
	CRR073301	Leaf 2	17.806
	CRR073302	Leaf 3	11.524
	CRR073303	Juvenile bud 1	11.561
	CRR073304	Juvenile bud 2	7.584
	CRR073305	Juvenile bud 3	20.270
	CRR073306	Third green 1	0.431
	CRR073307	Third green 2	0.596
	CRR073308	Third green 3	0.822
	CRR073309	Second white 1	0.056
	CRR073310	Second white 2	0.023
	CRR073311	Second white 3	0.023
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	8.657
	CRR073316	Gold flowering 2	14.570
	CRR073317	Gold flowering 3	13.086
	CRR073318	Tawny withering 1	22.696
	CRR073319	Tawny withering 2	12.257
	CRR073320	Tawny withering 3	24.915