Gene detail

Detail information of GWHGAAZE014605

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652807.1	0	PREDICTED: probable serine/threonine-protein kinase At1g01540 [Vitis vinifera]
Swissprot	tr\|Q3EDL4\|Y1154_ARATH	0	Probable serine/threonine-protein kinase At1g01540
trEMBL	tr\|F6H4J8\|F6H4J8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47062.1}
TAIR10	AT4G02630.1	3E-145	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	15094067	15096586	-
GWHAAZE00000004	mRNA	15094067	15096586	-
GWHAAZE00000004	exon	15094067	15094186	-
GWHAAZE00000004	exon	15094455	15094661	-
GWHAAZE00000004	exon	15095012	15095141	-
GWHAAZE00000004	exon	15095213	15095383	-
GWHAAZE00000004	exon	15095477	15095599	-
GWHAAZE00000004	exon	15095692	15095796	-
GWHAAZE00000004	exon	15095956	15096032	-
GWHAAZE00000004	exon	15096152	15096586	-
GWHAAZE00000004	CDS	15096152	15096586	-
GWHAAZE00000004	CDS	15095956	15096032	-
GWHAAZE00000004	CDS	15095692	15095796	-
GWHAAZE00000004	CDS	15095477	15095599	-
GWHAAZE00000004	CDS	15095213	15095383	-
GWHAAZE00000004	CDS	15095012	15095141	-
GWHAAZE00000004	CDS	15094455	15094661	-
GWHAAZE00000004	CDS	15094067	15094186	-

Transcript Sequence
>GWHTAAZE014619 ATGTCTGATCACAAAGCAACTTTCATGAACGATCAACTCTCAAAACAAACCTCCATTTTCGGGCTCCGTTTGTGGGTCGTATTGGGTGTCTGTGTCGGAGCTTCATTTGTTCTCCTCCTCTTCCTCCTCTCTCTCTGGTTCACCTCTAAGCGCAACAACAAAATCAAGCCCCACTCTCATCATCAACCCCCCACAATCCCCAATGTCTCCAGGGATATTCAAGAAATCCGCATCGAGCAGTCAAGAAACTGCCCCAATTCCAACCCCACCCGGATCCAGCCCAACCCTTTGCCGGAATCGGAACAATTCTCCGGACTTGAGGGTGAGGTCAAGCCGGAGGAGGAGAGCCCAATCGGCTATCCTAGGATTCACATTGATATTGGGAAAGGGCATAGGATTTTGTACCCTGAAAAATTTGGCGGGAGGGAAGATCAGGGAGGGTATGGGATTGTGTATCATGGTGTTTTTGCCGATAATACTCAGGTTGCTGTCAAGAACTTGCTTAATAATAGAGGACAAGCTGAGAAGGAATTTGAAGTGGAAGTTGAAGCAATTGGACGAGTACGGCACAAGAATTTAGTTAGGTTGCTAGGCTACTGCGCAGAAGGAGCACATAGGATGCTTGTTTATGAGTATGTAAATAATGGGAATTTAGAACAATGGCTTCACGGGGATGTTGGACCTTGCAGTCCTCTTACTTGGGATATTCGAATGAACATTATTCTTGGAACAGCCAAAGGGTTAACTTACCTTCACGAGGGACTCGAACCAAAAGTAGTTCACCGTGATATAAAATCAAGCAACATATTACTTGATAAGCAGTGGAATTCGAAGGTTTCAGATTTTGGACTGGCCAAACTCCTTGGCTCGGACAGTAGCTACATTACAACCCGAGTCATGGGAACATTCGGCTATGTAGCTCCTGAATATGCGAGTACGGGCATGTTGAATGAGAGAAGTGATGTATATAGTTTTGGGATTCTTATAATGGAAATAATCTCGGGGAGGAACCCTGTTGATTATAGTCGCCCAGCAGAAGAGGTGAACTTGGTTGAGTGGCTAAAGAAGATGGTTGCGAACAGGAATCCAGAAGTAGTTTTGGATCCAAAGCTACACGAGAAGCCTTCTTCAAGGGCATTAAAGCGGGCACTTTTAGTAGCTTTACGTTGTGTTGACCCGAATGCACAAAAGCGACCTAAGATGGGACACGTTGTACATATGCTTGAAGCTGAAGAATCTCCCTTCAACGATCGAAGAGCAGGGAGGGACCCTCAACGTGATAATTTGAAGGATGGACTGACAAAGAAGAGGGTGGCTGAATCTGGTGACAGCAGTGGGTGTGAAACTGCAGTTGAAGCCAACAGATAA

Network for GWHGAAZE014605

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	145	406	8.10E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.415
	SRR3591706	second leaf	9.104
	SRR3591707	mature leaf	2.163
	SRR3591708	Shoot apex	15.270
	SRR3591709	Stem	5.281
	SRR3591710	White floral bud	1.860
	SRR3591711	White flower	1.230
	SRR3591712	Green floral bud	5.017
	SRR3591713	Yellow flower	0.233
SRP173429	SRR8316895	Juvenile bud stage	9.137
	SRR8316896	Juvenile bud stage	9.531
	SRR8316897	Juvenile bud stage	3.166
	SRR8316894	Third green stage	4.236
	SRR8316900	Third green stage	8.855
	SRR8316901	Third green stage	9.564
	SRR8316898	Complete white stage	1.681
	SRR8316899	Complete white stage	10.559
	SRR8316903	Complete white stage	2.451
	SRR8316902	Silver flowering stage	0.686
	SRR8316904	Silver flowering stage	1.652
	SRR8316905	Silver flowering stage	0.443
	SRR8316906	Gold flowering stage	1.837
	SRR8316907	Gold flowering stage	1.234
	SRR8316908	Gold flowering stage	1.829
SRP132670	SRR6706286	Control	12.638
	SRR6706287	Light intensity 50%	14.086
	SRR6706288	Light intensity 20%	16.590
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.925
	CNS0095593	Slightly white alabastrum(diploid) 2	5.926
	CNS0095594	Slightly white alabastrum(diploid) 3	6.304
	CNS0095595	Whole white alabastrum(diploid) 2	3.527
	CNS0095596	Whole white alabastrum(diploid) 3	4.663
	CNS0095597	Whole white alabastrum(diploid) 4	4.131
	CNS0095598	Silvery flower (diploied) 1	3.468
	CNS0095599	Silvery flower (diploied) 2	3.188
	CNS0095600	Silvery flower (diploied) 3	2.285
	CNS0095601	Golden flower (diploid) 1	3.055
	CNS0095602	Golden flower (diploid) 2	2.028
	CNS0095603	Golden flower (diploid) 3	2.275
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.954
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.908
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.645
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.597
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.617
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.334
	CNS0095610	Silvery flower (tetraploid) 1	2.726
	CNS0095611	Silvery flower (tetraploid) 2	1.458
	CNS0095612	Silvery flower (tetraploid) 3	1.679
	CNS0095613	Golden flower (tetraploid) 1	0.145
	CNS0095614	Golden flower (tetraploid) 2	1.136
	CNS0095615	Golden flower (tetraploid) 3	0.332
CRA001975	CRR073297	Stem 1	17.469
	CRR073298	Stem 2	15.395
	CRR073299	Stem 3	14.147
	CRR073300	Leaf 1	11.367
	CRR073301	Leaf 2	11.224
	CRR073302	Leaf 3	9.849
	CRR073303	Juvenile bud 1	9.086
	CRR073304	Juvenile bud 2	7.049
	CRR073305	Juvenile bud 3	10.255
	CRR073306	Third green 1	1.114
	CRR073307	Third green 2	1.280
	CRR073308	Third green 3	1.396
	CRR073309	Second white 1	0.708
	CRR073310	Second white 2	0.430
	CRR073311	Second white 3	0.383
	CRR073312	Silver flowering 1	0.181
	CRR073313	Silver flowering 2	0.058
	CRR073314	Silver flowering 3	0.077
	CRR073315	Gold flowering 1	14.250
	CRR073316	Gold flowering 2	21.112
	CRR073317	Gold flowering 3	8.244
	CRR073318	Tawny withering 1	7.403
	CRR073319	Tawny withering 2	4.179
	CRR073320	Tawny withering 3	5.988