Gene detail

Detail information of GWHGAAZE014567

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP02477.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|P53681\|CRK_DAUCA	CDPK-related protein kinase
trEMBL	tr\|A0A068U2C5\|A0A068U2C5_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02477.1}
TAIR10	AT3G50530.1	CDPK-related kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13968160	13975392	+
GWHAAZE00000004	mRNA	13968160	13975392	+
GWHAAZE00000004	exon	13968160	13968687	+
GWHAAZE00000004	exon	13971719	13971849	+
GWHAAZE00000004	exon	13972023	13972064	+
GWHAAZE00000004	exon	13972198	13972306	+
GWHAAZE00000004	exon	13972415	13972493	+
GWHAAZE00000004	exon	13972613	13972909	+
GWHAAZE00000004	exon	13972992	13973104	+
GWHAAZE00000004	exon	13974584	13974691	+
GWHAAZE00000004	exon	13974778	13974840	+
GWHAAZE00000004	exon	13974939	13975106	+
GWHAAZE00000004	exon	13975252	13975392	+
GWHAAZE00000004	CDS	13968160	13968687	+
GWHAAZE00000004	CDS	13971719	13971849	+
GWHAAZE00000004	CDS	13972023	13972064	+
GWHAAZE00000004	CDS	13972198	13972306	+
GWHAAZE00000004	CDS	13972415	13972493	+
GWHAAZE00000004	CDS	13972613	13972909	+
GWHAAZE00000004	CDS	13972992	13973104	+
GWHAAZE00000004	CDS	13974584	13974691	+
GWHAAZE00000004	CDS	13974778	13974840	+
GWHAAZE00000004	CDS	13974939	13975106	+
GWHAAZE00000004	CDS	13975252	13975392	+

Transcript Sequence
>GWHTAAZE014581 ATGGGTATTTGCACTTCGAAACAACCCAAACTCTCCGATCACGACCAATCCGGGAATAAAACCAACCCTATTCCGACCAAGGATAGCTCTAATCAGGTCAAGGACACTCCTAAACGACCTGAGAATACCGAAATCCCAAAATCTCCGTTTTTTCCGTTTTACAGTCCAAGTCCAGCTCACTATTTGTTCTCCAAAAAGTCTCCGGCGAGATCTTCGGCCAATTCGACACCGAAGAGGTTTTTCCGGCGGCCGTTCCCGCCGCCGTCGCCGGCGAAGCATATAAGGGCGGCGTTGGCTCGGCGGCACGGGTCGGTGAAGCCAAACGAGGCGGCGATACCTGAGGGGAATGAGAGTAGTGATGGGTCGTGTTTGGATAAAGGATTTGGATTTTCGAAGAATTTTGGGAGTAAGTATGAGATTGGGGAGGAGGTTGGGAGAGGGCATTTTGGGTATACCTGTAAGGCTAAGTTTAAGAAAGGTGAGCTCAAAGGACAAGAGGTTGCTGTTAAGGTCATACCCAAAGCTAAGATGACGACTGCCATAGCCATTGAAGATGTGAGAAGGGAGGTAAAAATTTTGAGAGCTTTGACAGGACATAGTAATCTAGTCCAATTTTATGACGCATATGAAGACCATGATAATGTCTACGTCGTGATGGAGTTGTGTGAAGGAGGGGAGCTTTTGGATAGAATACTTTCAAGGGGTGGAAGATACACGGAAGATGATGCTAAGGCTGTGATGATCCAAATTTTGAATTTCGTTGCATTTTGCCATCTTCAAGGTGTGGTGCACCGGGATCTTAAGCCAGAGAATTTCTTGTTTTCTTCCAAGGATGAAAACTCACAATTGAAGGCCATAGATTTTGGACTATCAGATTTCGTGAAGCCAGATGAAAGGCTTAATGACATAGTCGGCAGTGCATATTATGTGGCACCTGAAGTTCTACATAGATCTTACAGTACAGAGGCCGATGTTTGGAGTATTGGCGTTATCGCATATATTCTATTGTGTGGAAGCCGTCCATTTTGGGCTCGAACTGAGTCTGGAATCTTCCGGGCTGTTCTAAAAGCTGATCCAAGTTTCGAGGAATCACCTTGGCCTACTCTATCTTCTGAGGCAAAGGACTTTGTCAAACGTCTATTAAATAAAGACCCGAGGAAAAGAATGACAGCTGCTCAAGCCTTAAGTCATCCATGGATTAGAAATACTAATGACGTAAAAGTGCCCCTGGACATACTAATATTCAAACTCATGAAGGCTTATATGCGTTCTTCTGCTCTTCGGAAAGCTGCTTTACGGGCTTTATCTAAAACATTGACTGTTGATGAGCTATTTTATCTGAAAGAGCAATTTGCTATGTTGATACCAAGCAAAAATGGCTCCATAAGCCTGGAAAATATCAAATCGGCCTTGATGAAGCATGCAACAGATGCTATGAAGGAATCCCGTGTCCATGATTTCCTAGCATCACTTAATGCACTTCAATACAGAAGAATGGATTTTGAGGAATTCTGTGGAGCCGCATTAAGCGTCTATCAGCTTGAGGCTTCTGAGCAATGGGAGCAACACGCTCGTTGTGCCTACGAACTTTTCGAGAAAGATGGAAACAGAGCCATAGTTATTGAAGAATTGGCCTCAGAACTGGGCCTGAGCCCATCTGTCCCGGTTCATGCCGTCCTCCATGACTGGATTAGGCATACTGATGGAAAGCTTAGTTTCCTTGGGTTTGTCAAATTGTTGCATGGTGTCTCTAGCCGGTCCCTTGCAAAAGTTCAATAA

Network for GWHGAAZE014567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	138	400	8.40E-72

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.159
	SRR3591706	second leaf	45.364
	SRR3591707	mature leaf	39.527
	SRR3591708	Shoot apex	57.812
	SRR3591709	Stem	52.111
	SRR3591710	White floral bud	54.556
	SRR3591711	White flower	51.010
	SRR3591712	Green floral bud	42.090
	SRR3591713	Yellow flower	30.406
SRP173429	SRR8316895	Juvenile bud stage	30.904
	SRR8316896	Juvenile bud stage	36.048
	SRR8316897	Juvenile bud stage	15.965
	SRR8316894	Third green stage	15.209
	SRR8316900	Third green stage	40.779
	SRR8316901	Third green stage	38.412
	SRR8316898	Complete white stage	31.024
	SRR8316899	Complete white stage	60.941
	SRR8316903	Complete white stage	52.675
	SRR8316902	Silver flowering stage	24.655
	SRR8316904	Silver flowering stage	48.282
	SRR8316905	Silver flowering stage	23.533
	SRR8316906	Gold flowering stage	57.123
	SRR8316907	Gold flowering stage	48.778
	SRR8316908	Gold flowering stage	53.410
SRP132670	SRR6706286	Control	25.068
	SRR6706287	Light intensity 50%	25.798
	SRR6706288	Light intensity 20%	25.044
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.481
	CNS0095593	Slightly white alabastrum(diploid) 2	23.227
	CNS0095594	Slightly white alabastrum(diploid) 3	16.247
	CNS0095595	Whole white alabastrum(diploid) 2	19.311
	CNS0095596	Whole white alabastrum(diploid) 3	14.623
	CNS0095597	Whole white alabastrum(diploid) 4	17.784
	CNS0095598	Silvery flower (diploied) 1	34.862
	CNS0095599	Silvery flower (diploied) 2	30.081
	CNS0095600	Silvery flower (diploied) 3	63.108
	CNS0095601	Golden flower (diploid) 1	31.670
	CNS0095602	Golden flower (diploid) 2	55.452
	CNS0095603	Golden flower (diploid) 3	51.294
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.856
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.447
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.846
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.405
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.966
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.697
	CNS0095610	Silvery flower (tetraploid) 1	54.846
	CNS0095611	Silvery flower (tetraploid) 2	57.259
	CNS0095612	Silvery flower (tetraploid) 3	70.227
	CNS0095613	Golden flower (tetraploid) 1	23.444
	CNS0095614	Golden flower (tetraploid) 2	45.479
	CNS0095615	Golden flower (tetraploid) 3	35.015
CRA001975	CRR073297	Stem 1	41.418
	CRR073298	Stem 2	38.264
	CRR073299	Stem 3	44.632
	CRR073300	Leaf 1	40.818
	CRR073301	Leaf 2	38.508
	CRR073302	Leaf 3	33.466
	CRR073303	Juvenile bud 1	38.606
	CRR073304	Juvenile bud 2	34.169
	CRR073305	Juvenile bud 3	50.589
	CRR073306	Third green 1	117.173
	CRR073307	Third green 2	83.209
	CRR073308	Third green 3	94.357
	CRR073309	Second white 1	129.828
	CRR073310	Second white 2	116.165
	CRR073311	Second white 3	128.461
	CRR073312	Silver flowering 1	91.444
	CRR073313	Silver flowering 2	94.058
	CRR073314	Silver flowering 3	68.753
	CRR073315	Gold flowering 1	28.433
	CRR073316	Gold flowering 2	39.428
	CRR073317	Gold flowering 3	32.552
	CRR073318	Tawny withering 1	46.217
	CRR073319	Tawny withering 2	31.329
	CRR073320	Tawny withering 3	40.341