Gene detail

Detail information of GWHGAAZE014561

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092742.1	5.54482E-44	PREDICTED: uncharacterized protein LOC105172852 [Sesamum indicum]
Swissprot	tr\|Q9LTH4\|PCLL_ARATH	2E-16	Transcription factor BOA
trEMBL	tr\|M1AMN5\|M1AMN5_SOLTU	2E-42	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400026096}
TAIR10	AT1G49560.1	6E-28	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13874287	13877042	+
GWHAAZE00000004	mRNA	13874287	13877042	+
GWHAAZE00000004	exon	13874287	13874576	+
GWHAAZE00000004	exon	13874675	13874865	+
GWHAAZE00000004	exon	13875193	13875524	+
GWHAAZE00000004	exon	13876365	13876441	+
GWHAAZE00000004	exon	13876629	13877042	+
GWHAAZE00000004	five_prime_UTR	13874287	13874576	+
GWHAAZE00000004	five_prime_UTR	13874675	13874865	+
GWHAAZE00000004	five_prime_UTR	13875193	13875244	+
GWHAAZE00000004	CDS	13875245	13875524	+
GWHAAZE00000004	CDS	13876365	13876441	+
GWHAAZE00000004	CDS	13876629	13876865	+
GWHAAZE00000004	three_prime_UTR	13876866	13877042	+

Transcript Sequence
>GWHTAAZE014575 GACCCCTCTTTTCACATGTTTTTATCTGGGTAATGTAAGAGAGAAGTTTCTTGGTGTGAACAGGAAGGAAAAAAAAATGGGTCTGAACTCGGCGGCATTGAATTTAGACTTGAATTCAGATTTTGTCACAAAACCCGTTTCCGATTTTCTCTCGGATCTTTCCCCTCTCGATCATACTTCAAAGAAAGTAGAGAAATTGGAGCACTGTATTCATTTATTACAAGATGAAATGAGAAAGATCCAAGTTTTTCAGCGTGAACTGCCCCTCTCTATGCTCCTTTTAAACGATGCTATTACAAAACTGAAGGAGGAGACGGTGAAATTGAAGGGTAATTCAGGCGAAGATGGAGGGTTAAAAAAGTCGATTGACAACAGTGACAGGAAGAACTGGATGAGCTCCGTTCAGCTGTGGAGCAACAATGCTCCGTATGAAAATTGTGATCTTTTCAAAAAACAAGACCCCTTATCACCCGTGGATTCCATGAGTAATATAAGTAACAGGACGGGTGGTTTTGTGGTGCCATTGCCAATTAATGGAGAATCTGGTTTGGATATGGAGGAAAAGGAGTTTTTACCCAAACTCGGTGTATCGATTTCGAATCCGGGTGAAAATGGGTTCCATCGATTTGAATTCGGAACCAGAGGGGACAAGAACTAGTCTTGGTTTGGCTTTGATGGCGGAGCAAAATAATAATTCTGAGAGCATTATGAACAAGGCACATCAGCAAACTCAGAGGAAACCGAGGCGATGCTGGTCCCCTGAGTTACACCGGAGATTTGTTAACGCTCTTCAACAACTTGGAGGAGCGCAAGTTGCCACACCCAAACAGATAAGAGAACTAATGCAAGTGGAAGACCTTACCAACGATGAAATCAAAAGCCATTTGCAGAAATACAGACTCCATGTCCGAAAAGTTACACCTTTATCAGCTCCAATATCAGATATCTTCTGGTCGGGCACAATCCATTATTGTGCAGAAGTGTCAAAGCCAAACACTGCCCAATCTGGGTCCCCGGAGGGTCCACTCCAACACTTGAGCGGATCATCAGCTAATAAAGGGCTCTCCATCAGCGTGGAAGATCCAGATGAAGATATGAGTAGTCTCAAATCCATTACTGGAAATTAGTTTAAGGTCGTCGGCTTCACTGACCCGTGAATTTTGCCAAAGAGACTAAATTAGAGAGGGAGAGAATCAGACTGTGAAGTTCAATTAAAGTTGACAAAAACATAATTTACATTAACATAGTAAACAGAGAGTGGCCCCTATATAGAAGAGAGGCTAGCTATGGAAAGTTCGGTTAGT

Network for GWHGAAZE014561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	71	122	3.00E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.169
	SRR3591706	second leaf	0.449
	SRR3591707	mature leaf	0.110
	SRR3591708	Shoot apex	0.622
	SRR3591709	Stem	1.554
	SRR3591710	White floral bud	1.303
	SRR3591711	White flower	2.698
	SRR3591712	Green floral bud	1.523
	SRR3591713	Yellow flower	1.684
SRP173429	SRR8316895	Juvenile bud stage	2.432
	SRR8316896	Juvenile bud stage	2.243
	SRR8316897	Juvenile bud stage	1.357
	SRR8316894	Third green stage	1.639
	SRR8316900	Third green stage	6.694
	SRR8316901	Third green stage	5.513
	SRR8316898	Complete white stage	2.736
	SRR8316899	Complete white stage	9.471
	SRR8316903	Complete white stage	4.454
	SRR8316902	Silver flowering stage	3.918
	SRR8316904	Silver flowering stage	2.446
	SRR8316905	Silver flowering stage	0.714
	SRR8316906	Gold flowering stage	2.533
	SRR8316907	Gold flowering stage	3.195
	SRR8316908	Gold flowering stage	3.525
SRP132670	SRR6706286	Control	4.753
	SRR6706287	Light intensity 50%	3.815
	SRR6706288	Light intensity 20%	3.715
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.636
	CNS0095593	Slightly white alabastrum(diploid) 2	14.072
	CNS0095594	Slightly white alabastrum(diploid) 3	7.431
	CNS0095595	Whole white alabastrum(diploid) 2	15.845
	CNS0095596	Whole white alabastrum(diploid) 3	12.614
	CNS0095597	Whole white alabastrum(diploid) 4	14.951
	CNS0095598	Silvery flower (diploied) 1	7.850
	CNS0095599	Silvery flower (diploied) 2	5.128
	CNS0095600	Silvery flower (diploied) 3	3.066
	CNS0095601	Golden flower (diploid) 1	8.200
	CNS0095602	Golden flower (diploid) 2	5.155
	CNS0095603	Golden flower (diploid) 3	5.616
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.864
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.471
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.440
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.802
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.754
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.652
	CNS0095610	Silvery flower (tetraploid) 1	1.510
	CNS0095611	Silvery flower (tetraploid) 2	2.435
	CNS0095612	Silvery flower (tetraploid) 3	0.868
	CNS0095613	Golden flower (tetraploid) 1	1.418
	CNS0095614	Golden flower (tetraploid) 2	1.092
	CNS0095615	Golden flower (tetraploid) 3	0.172
CRA001975	CRR073297	Stem 1	2.863
	CRR073298	Stem 2	1.589
	CRR073299	Stem 3	2.324
	CRR073300	Leaf 1	4.676
	CRR073301	Leaf 2	5.172
	CRR073302	Leaf 3	4.719
	CRR073303	Juvenile bud 1	7.690
	CRR073304	Juvenile bud 2	1.399
	CRR073305	Juvenile bud 3	3.696
	CRR073306	Third green 1	1.403
	CRR073307	Third green 2	0.715
	CRR073308	Third green 3	0.469
	CRR073309	Second white 1	0.091
	CRR073310	Second white 2	0.309
	CRR073311	Second white 3	0.041
	CRR073312	Silver flowering 1	0.746
	CRR073313	Silver flowering 2	0.945
	CRR073314	Silver flowering 3	0.689
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.113
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.434
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.392