Gene detail

Detail information of GWHGAAZE014560

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002306454.2	2.8999E-105	hypothetical protein POPTR_0005s14110g [Populus trichocarpa]
Swissprot	tr\|Q9SD34\|C3H44_ARATH	0.0000006	Zinc finger CCCH domain-containing protein 44
trEMBL	tr\|B9H6D0\|B9H6D0_POPTR	1E-105	Uncharacterized protein {ECO:0000313\|EMBL:EEE93450.2}
TAIR10	AT3G19080.1	1E-59	SWIB complex BAF60b domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13860499	13865204	+
GWHAAZE00000004	mRNA	13860499	13865204	+
GWHAAZE00000004	exon	13860499	13860717	+
GWHAAZE00000004	exon	13862317	13862491	+
GWHAAZE00000004	exon	13864114	13864167	+
GWHAAZE00000004	exon	13864381	13864556	+
GWHAAZE00000004	exon	13864780	13864901	+
GWHAAZE00000004	exon	13865138	13865204	+
GWHAAZE00000004	CDS	13860499	13860717	+
GWHAAZE00000004	CDS	13862317	13862491	+
GWHAAZE00000004	CDS	13864114	13864167	+
GWHAAZE00000004	CDS	13864381	13864556	+
GWHAAZE00000004	CDS	13864780	13864901	+
GWHAAZE00000004	CDS	13865138	13865204	+

Transcript Sequence
>GWHTAAZE014574 ATGGTATCGGATTCGGAGCTCGTCGGCCGGCTACGTGAATTCCTAAGCACTTCGGACCTGGACACGACTACGACGGCAATCGTGCGGCGAAAGTTGGAGGAAGATTTCGGAATCGATTTGTCGGATAAGAAGGCTTTTATTAGAGAGCAGGTTGACCTTTACCTTCAAAGCCAGTTCGATAAACCCGATGAAGAAGAACAAGGTGGAGAGGGGGATAAGGTTGTTAAACAACTCTGGAGCTATATCCGGGAACATAATTTGCAAGATCCATCCAATAGACGAAATATACTTTGTGATGAAACATTGCGTGATCTATTTCGTGTGGATTGCATAAATATGTTCCAAATGAACAAGGCCCTAGCAAAGCATATCTGGCCGTTGGATTCTGATGGTGCAGCTCCAGCCAAGTCTCCACCAAAGGAAAAGTCACGAAAGCATGAGAGGGAAGATCCAGATGAGCCCAAAAAAAAGGGAAAGCGGCAGAAGGGAGGTACTTCAGGTTTTCTTGCTCCAATTCCAATTTCGGATGCTCTAGTAAAGTTCCTTGGTACAGGAGAGAGTGCATTATCCAGGGCTGATGTTGTAAAGAGAATTTGGGAATACATTAAACAAAACAACCTCCAGGATCCTTCGGATAAGAGGAGAATAATATGTGATGAGAAGCTGAAGGAACTGTTTGATGTTGGCACCTTCAATGGATTTACGGTTTCAAAGCTCCTAACCGCTCATTTCATTAAGGCTGAACGATGTGCATTTCTGAGCAGCGACATAGTCATAGATTTTTCTTCTACACTAGTTTGCATTTCAGAGTGA

Network for GWHGAAZE014560

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08766.12	DEK_C	2	55	1.40E-17
PF02201.19	SWIB	72	124	1.70E-21
PF02201.19	SWIB	172	244	9.70E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.277
	SRR3591706	second leaf	19.420
	SRR3591707	mature leaf	10.201
	SRR3591708	Shoot apex	25.390
	SRR3591709	Stem	17.552
	SRR3591710	White floral bud	18.775
	SRR3591711	White flower	21.303
	SRR3591712	Green floral bud	17.519
	SRR3591713	Yellow flower	20.477
SRP173429	SRR8316895	Juvenile bud stage	15.998
	SRR8316896	Juvenile bud stage	23.911
	SRR8316897	Juvenile bud stage	9.012
	SRR8316894	Third green stage	6.292
	SRR8316900	Third green stage	16.424
	SRR8316901	Third green stage	14.744
	SRR8316898	Complete white stage	6.666
	SRR8316899	Complete white stage	15.386
	SRR8316903	Complete white stage	10.471
	SRR8316902	Silver flowering stage	7.760
	SRR8316904	Silver flowering stage	9.863
	SRR8316905	Silver flowering stage	5.262
	SRR8316906	Gold flowering stage	17.688
	SRR8316907	Gold flowering stage	17.619
	SRR8316908	Gold flowering stage	19.413
SRP132670	SRR6706286	Control	14.797
	SRR6706287	Light intensity 50%	13.433
	SRR6706288	Light intensity 20%	14.217
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.818
	CNS0095593	Slightly white alabastrum(diploid) 2	18.375
	CNS0095594	Slightly white alabastrum(diploid) 3	23.619
	CNS0095595	Whole white alabastrum(diploid) 2	12.740
	CNS0095596	Whole white alabastrum(diploid) 3	14.421
	CNS0095597	Whole white alabastrum(diploid) 4	11.971
	CNS0095598	Silvery flower (diploied) 1	17.311
	CNS0095599	Silvery flower (diploied) 2	19.293
	CNS0095600	Silvery flower (diploied) 3	14.288
	CNS0095601	Golden flower (diploid) 1	17.066
	CNS0095602	Golden flower (diploid) 2	13.279
	CNS0095603	Golden flower (diploid) 3	13.690
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.687
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.886
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.789
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.601
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.587
	CNS0095610	Silvery flower (tetraploid) 1	13.337
	CNS0095611	Silvery flower (tetraploid) 2	10.397
	CNS0095612	Silvery flower (tetraploid) 3	13.473
	CNS0095613	Golden flower (tetraploid) 1	14.847
	CNS0095614	Golden flower (tetraploid) 2	14.697
	CNS0095615	Golden flower (tetraploid) 3	10.746
CRA001975	CRR073297	Stem 1	12.997
	CRR073298	Stem 2	12.563
	CRR073299	Stem 3	10.144
	CRR073300	Leaf 1	7.496
	CRR073301	Leaf 2	10.637
	CRR073302	Leaf 3	5.936
	CRR073303	Juvenile bud 1	8.752
	CRR073304	Juvenile bud 2	4.805
	CRR073305	Juvenile bud 3	9.728
	CRR073306	Third green 1	11.174
	CRR073307	Third green 2	6.150
	CRR073308	Third green 3	6.706
	CRR073309	Second white 1	6.131
	CRR073310	Second white 2	8.189
	CRR073311	Second white 3	8.950
	CRR073312	Silver flowering 1	11.917
	CRR073313	Silver flowering 2	9.100
	CRR073314	Silver flowering 3	8.560
	CRR073315	Gold flowering 1	4.664
	CRR073316	Gold flowering 2	7.704
	CRR073317	Gold flowering 3	6.106
	CRR073318	Tawny withering 1	11.540
	CRR073319	Tawny withering 2	15.025
	CRR073320	Tawny withering 3	17.424