Gene detail

Detail information of GWHGAAZE014559

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099217.1	0	PREDICTED: serine/threonine-protein kinase SAPK10-like [Sesamum indicum]
Swissprot	tr\|Q39193\|SRK2I_ARATH	6E-173	Serine/threonine-protein kinase SRK2I
trEMBL	tr\|A0A067KQ66\|A0A067KQ66_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP38242.1}
TAIR10	AT4G33950.1	1E-135	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13850715	13855207	-
GWHAAZE00000004	mRNA	13850715	13855207	-
GWHAAZE00000004	exon	13850715	13850978	-
GWHAAZE00000004	exon	13851787	13851885	-
GWHAAZE00000004	exon	13852013	13852117	-
GWHAAZE00000004	exon	13852387	13852479	-
GWHAAZE00000004	exon	13852967	13852999	-
GWHAAZE00000004	exon	13853088	13853189	-
GWHAAZE00000004	exon	13853277	13853351	-
GWHAAZE00000004	exon	13855031	13855207	-
GWHAAZE00000004	CDS	13855031	13855207	-
GWHAAZE00000004	CDS	13853277	13853351	-
GWHAAZE00000004	CDS	13853088	13853189	-
GWHAAZE00000004	CDS	13852967	13852999	-
GWHAAZE00000004	CDS	13852387	13852479	-
GWHAAZE00000004	CDS	13852013	13852117	-
GWHAAZE00000004	CDS	13851787	13851885	-
GWHAAZE00000004	CDS	13850715	13850978	-

Transcript Sequence
>GWHTAAZE014573 ATGGATCGGGCGATAGCAGCAATGGGTTCGGGTATGGACATGCCGATCATGCACGACAGTGACCGTTACGATTTCCTCAGAGATATCGGGTCGGGTAATTTTGGGGTTGCTAGGCTTATGAGGGATAAGCAGACCAAAGAACTGGTTGCGGTCAAGTACATCGAGAGAGGGGATAAGATAGATGAAAATGTTCAGAGGGAAATCATTAATCACAGGTCATTGAGGCACCCTAACATCGTTAGATTCAAAGAGGTCATACTGACACCAACTCATCTGGCTATTGTGATGGAGTATGCATCCGGAGGAGAGCTTTTTGATAGAATTTGCAATGCAGGGCGCTTCAGTGAGGATGAGGCTCGGTTTTTCTTTCAACAACTTATATCTGGGTCTTCGGTGCTGCATTCACAACCAAAATCGACAGTTGGAACACCTGCATACATTGCTCCAGAAGTATTACTTAGGCAAGAATATGATGGCAAGACAGCAGATGTGTGGTCTTGTGGGGTGACACTATATGTCATGCTGGTTGGTGCATATCCTTTTGAGGACCCTGACGAACCGAGAGACTTCCGAAGGACAATACATAGAGTTCTGCATGTTCAGTATTCTATTCCAGAACATGTACAAATCTCTGCCGAATGTCGCTACCTGATCTCAAGGATCTTTGACGCAGACCCTGCAAAGAGGATCACGATTCCCGAGATAAGGAACCACGAGTGGTTTCTAAAGAACCTACCTGCAGATCTGGTAGAGGAGAACATCAGCAAGGCATTTGAAGAGCCTGATCAACCAATGCAGAGCATTGAAGTGATCATGCAGATAATATCAGAAGCAACTATACCGCCAGTTGGCCTTTATAACTTCGATATGGATGATGACATGGACGACTTGGAGTCCGATCCTGACCTTGATATTGACAGCAGCGGTGAGATCATATATGCAATCTGA

Network for GWHGAAZE014559

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	23	136	5.10E-25
PF00069.26	Pkinase	137	241	2.50E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_OST1L

KEGG pathway

KO	Enzyme	pathway	mapID
K14498	SNRK2	MAPK signaling pathway - plant	map04016
K14498	SNRK2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.449
	SRR3591706	second leaf	6.382
	SRR3591707	mature leaf	7.739
	SRR3591708	Shoot apex	21.109
	SRR3591709	Stem	36.812
	SRR3591710	White floral bud	6.117
	SRR3591711	White flower	13.162
	SRR3591712	Green floral bud	6.756
	SRR3591713	Yellow flower	10.265
SRP173429	SRR8316895	Juvenile bud stage	7.258
	SRR8316896	Juvenile bud stage	8.784
	SRR8316897	Juvenile bud stage	5.139
	SRR8316894	Third green stage	3.120
	SRR8316900	Third green stage	11.003
	SRR8316901	Third green stage	8.705
	SRR8316898	Complete white stage	3.589
	SRR8316899	Complete white stage	15.220
	SRR8316903	Complete white stage	5.676
	SRR8316902	Silver flowering stage	3.402
	SRR8316904	Silver flowering stage	3.229
	SRR8316905	Silver flowering stage	0.861
	SRR8316906	Gold flowering stage	6.442
	SRR8316907	Gold flowering stage	6.262
	SRR8316908	Gold flowering stage	5.768
SRP132670	SRR6706286	Control	13.328
	SRR6706287	Light intensity 50%	11.314
	SRR6706288	Light intensity 20%	11.705
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.491
	CNS0095593	Slightly white alabastrum(diploid) 2	6.798
	CNS0095594	Slightly white alabastrum(diploid) 3	6.791
	CNS0095595	Whole white alabastrum(diploid) 2	6.401
	CNS0095596	Whole white alabastrum(diploid) 3	6.376
	CNS0095597	Whole white alabastrum(diploid) 4	6.878
	CNS0095598	Silvery flower (diploied) 1	17.112
	CNS0095599	Silvery flower (diploied) 2	12.807
	CNS0095600	Silvery flower (diploied) 3	15.492
	CNS0095601	Golden flower (diploid) 1	19.199
	CNS0095602	Golden flower (diploid) 2	20.451
	CNS0095603	Golden flower (diploid) 3	17.950
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.596
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.654
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.033
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.090
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.777
	CNS0095610	Silvery flower (tetraploid) 1	16.727
	CNS0095611	Silvery flower (tetraploid) 2	19.913
	CNS0095612	Silvery flower (tetraploid) 3	11.339
	CNS0095613	Golden flower (tetraploid) 1	6.095
	CNS0095614	Golden flower (tetraploid) 2	13.811
	CNS0095615	Golden flower (tetraploid) 3	5.433
CRA001975	CRR073297	Stem 1	14.649
	CRR073298	Stem 2	12.596
	CRR073299	Stem 3	15.213
	CRR073300	Leaf 1	13.134
	CRR073301	Leaf 2	12.409
	CRR073302	Leaf 3	11.464
	CRR073303	Juvenile bud 1	11.337
	CRR073304	Juvenile bud 2	7.482
	CRR073305	Juvenile bud 3	15.996
	CRR073306	Third green 1	7.873
	CRR073307	Third green 2	6.140
	CRR073308	Third green 3	7.478
	CRR073309	Second white 1	10.228
	CRR073310	Second white 2	8.400
	CRR073311	Second white 3	6.315
	CRR073312	Silver flowering 1	6.937
	CRR073313	Silver flowering 2	11.128
	CRR073314	Silver flowering 3	13.445
	CRR073315	Gold flowering 1	6.699
	CRR073316	Gold flowering 2	10.608
	CRR073317	Gold flowering 3	8.251
	CRR073318	Tawny withering 1	45.264
	CRR073319	Tawny withering 2	42.174
	CRR073320	Tawny withering 3	32.481