Gene detail

Detail information of GWHGAAZE014534

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011004600.1	0	PREDICTED: oxygen-evolving enhancer protein 1, chloroplastic [Populus euphratica]
Swissprot	tr\|P26320\|PSBO_SOLTU	0	Oxygen-evolving enhancer protein 1, chloroplastic (Precursor)
trEMBL	tr\|A9PHA9\|A9PHA9_POPTR	0	O2 evolving complex 33kD family protein {ECO:0000313\|EMBL:EEE94230.1}
TAIR10	AT5G66570.1	2E-142	PS II oxygen-evolving complex 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13555082	13556845	-
GWHAAZE00000004	mRNA	13555082	13556845	-
GWHAAZE00000004	exon	13555082	13555837	-
GWHAAZE00000004	exon	13556609	13556845	-
GWHAAZE00000004	CDS	13556609	13556845	-
GWHAAZE00000004	CDS	13555082	13555837	-

Transcript Sequence
>GWHTAAZE014548 ATGGCTGCAGCAGCGACGACGTCGTTTATGCAGACGACGAAGGTCGGAATCCAGTCCCGAAGTACAAGCCTCCAGCTAAGGTCTAATCAAAGCGTATGCAAGGCCTTCGGTGTAGAAACCACCGGATCCAGGGTCACCTGCTCTCTTCAGACCGATCTAAAAGACTTTACACACAAGTGTGCCGATGCAGCCAAGGTTGCCGGATTTGCTCTCGCCACCTCTGCCCTTCTCGCCTCGGGAGCAAGTGCTGAAGGACCACCGAAACGACTAACATTCGACGAAATCCAAAGCAAGACATACCTTGAAGTAAAGGGAACCGGCACCGCTAACCAATGCCCAACCATTGACGGTGGAGTTGAAAGCTTTGCCTTCAAACCCGGCAAATACAACGCCAAAAAACTCTGCCTAGAGCCAACCTCCTTCACCGTCAAAGCTGAGGGCGTGAGCAAAAACTCCCCACCGGAGTTCCAAAACACAAAGCTCATGACCCGCTTAACCTACACCCTCGATGAGATTGAGGGTCCCCTCGAAGTATCCCCCGACGGCACCCTCAAGTTCGAGGAGAAAGACGGGATTGATTACGCTGCGGTTACCGTTCAGCTTCCCGGAGGTGAGCGCGTGCCCTTCCTCTTCACCATCAAGCAGCTAGTAGCCTCCGGGAAGCCCGAGGCCTTTTCGGGTGAGTTTCTAGTGCCGTCGTACAGGGGTTCATCCTTCCTTGACCCAAAGGGTCGGGGTGGTTCCACCGGTTACGATAATGCGGTAGCGTTGCCTGCCGGAGGGAGGGGGGACGAGGAGGAGCTTTTGAAGGAGAATATAAAGAATACTGCGTCATCCTCGGGGAAAATTACGTTGAGTGTTGCAAAGAGTAAGCCGGAGACGGGGGAGGTGATTGGTGTATTTGAAAGTATTCAGCCATCCGATACTGATTTGGGGGCAAAGGCACCAAAGGATGTGAAAATCCAAGGGGTGTGGTATGCTCAACTTGATTAA

Network for GWHGAAZE014534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01716.19	MSP	97	329	5.30E-98

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02716	psbO	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0010207	biological_process	photosystem II assembly
GO:0042549	biological_process	photosystem II stabilization
GO:0009654	cellular_component	photosystem II oxygen evolving complex
GO:0010242	molecular_function	oxygen evolving activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	839.768
	SRR3591706	second leaf	2673.447
	SRR3591707	mature leaf	1690.866
	SRR3591708	Shoot apex	944.065
	SRR3591709	Stem	687.893
	SRR3591710	White floral bud	107.283
	SRR3591711	White flower	101.671
	SRR3591712	Green floral bud	51.544
	SRR3591713	Yellow flower	31.262
SRP173429	SRR8316895	Juvenile bud stage	132.485
	SRR8316896	Juvenile bud stage	82.741
	SRR8316897	Juvenile bud stage	65.731
	SRR8316894	Third green stage	30.440
	SRR8316900	Third green stage	45.184
	SRR8316901	Third green stage	38.207
	SRR8316898	Complete white stage	26.035
	SRR8316899	Complete white stage	51.764
	SRR8316903	Complete white stage	45.146
	SRR8316902	Silver flowering stage	17.694
	SRR8316904	Silver flowering stage	29.908
	SRR8316905	Silver flowering stage	14.900
	SRR8316906	Gold flowering stage	11.364
	SRR8316907	Gold flowering stage	15.601
	SRR8316908	Gold flowering stage	18.296
SRP132670	SRR6706286	Control	135.641
	SRR6706287	Light intensity 50%	84.282
	SRR6706288	Light intensity 20%	75.831
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	100.552
	CNS0095593	Slightly white alabastrum(diploid) 2	69.471
	CNS0095594	Slightly white alabastrum(diploid) 3	74.557
	CNS0095595	Whole white alabastrum(diploid) 2	45.492
	CNS0095596	Whole white alabastrum(diploid) 3	46.803
	CNS0095597	Whole white alabastrum(diploid) 4	31.002
	CNS0095598	Silvery flower (diploied) 1	225.309
	CNS0095599	Silvery flower (diploied) 2	220.300
	CNS0095600	Silvery flower (diploied) 3	89.633
	CNS0095601	Golden flower (diploid) 1	193.288
	CNS0095602	Golden flower (diploid) 2	133.601
	CNS0095603	Golden flower (diploid) 3	125.032
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.468
	CNS0095605	Slightly white alabastrum(tetraploid) 2	76.486
	CNS0095606	Slightly white alabastrum(tetraploid) 3	124.389
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.785
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.138
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.373
	CNS0095610	Silvery flower (tetraploid) 1	63.455
	CNS0095611	Silvery flower (tetraploid) 2	122.053
	CNS0095612	Silvery flower (tetraploid) 3	50.112
	CNS0095613	Golden flower (tetraploid) 1	15.086
	CNS0095614	Golden flower (tetraploid) 2	50.645
	CNS0095615	Golden flower (tetraploid) 3	19.625
CRA001975	CRR073297	Stem 1	213.765
	CRR073298	Stem 2	172.123
	CRR073299	Stem 3	323.943
	CRR073300	Leaf 1	48.480
	CRR073301	Leaf 2	63.548
	CRR073302	Leaf 3	58.109
	CRR073303	Juvenile bud 1	33.186
	CRR073304	Juvenile bud 2	22.592
	CRR073305	Juvenile bud 3	69.706
	CRR073306	Third green 1	9.432
	CRR073307	Third green 2	20.778
	CRR073308	Third green 3	15.820
	CRR073309	Second white 1	10.880
	CRR073310	Second white 2	5.886
	CRR073311	Second white 3	1.875
	CRR073312	Silver flowering 1	3.289
	CRR073313	Silver flowering 2	1.217
	CRR073314	Silver flowering 3	1.669
	CRR073315	Gold flowering 1	670.637
	CRR073316	Gold flowering 2	642.367
	CRR073317	Gold flowering 3	789.232
	CRR073318	Tawny withering 1	167.366
	CRR073319	Tawny withering 2	111.570
	CRR073320	Tawny withering 3	146.663