Gene detail

Detail information of GWHGAAZE014525

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269408.1	5.504E-133	PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
Swissprot	tr\|O22808\|LYK5_ARATH	4E-74	Protein LYK5 (Precursor)
trEMBL	tr\|F6GX02\|F6GX02_VITVI	2E-127	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44488.1}
TAIR10	AT2G33580.1	3E-64	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13389772	13390572	+
GWHAAZE00000004	mRNA	13389772	13390572	+
GWHAAZE00000004	exon	13389772	13390572	+
GWHAAZE00000004	CDS	13389772	13390572	+

Transcript Sequence
>GWHTAAZE014539 ATGCATGGAGATGTGTCAAAGGAAATAAATTTGCTAAACAAGATCAGCCACATTAATCTTATTCTTCTTTCGGGCATTTGTTTCAATGAGGGGCATTGGTATCTTGTTTATGAGTATGCTGCCAATGGCCCCTTAAGTAATTGGATCTATTACAACAGCAGCGATCGAATGGTCTTGAATTGGACAAAGAGAATACAGATTGCTTTGGATGTGGCCACAGGCCTTAGTTATCTCCATAGCTACACTTCTCCTCCCTACGTCCACAGGGATTTGAACGCCAGTAATGTTCTTCTCGATAGTGATTTTAGGGCCAAGATTACTAACTTCAACTTGGCAAGGTCAGCAGAAGGGCAAGAAAGTCAATTCGCCTTGACGATGGACATAGTGGGGACGAAAGGGTACATGGCTCCCGAGTACTTGGAGAACGGTTTGGTCTCGTCAAAGCTCGATGTTTATGCATTTGGGGTTCTGATGATGGAAATACTTAGTGGGAAAGAAGTTGCTGTTTTGTATGAAGGGGTAAACTCGCAATTAGCAGAAGTCTTGGTCCCTGTGCTTCATGAGGAAGAAGGGAAGGAGAATCTGAGGAATTTTATGGATCATTCTCTGCAAGGGAGTTACCCCATTGAGCTTGCTATGTTTGTAGCAAGGCTTACTGATAGCTGCATAAAAAAAGATCCATTGGGTCGCCCAGAGATGAGGGAGATTGTTCAGATTCTTTCAAGAACTTTGACTACTTCACTGTCTTGGGAATCATCAGTTAGCATAGAAGGATACCAAAGTTTGCACACCTTTACGTAA

Network for GWHGAAZE014525

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	4	240	5.50E-39

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.217
	SRR3591706	second leaf	0.174
	SRR3591707	mature leaf	0.141
	SRR3591708	Shoot apex	0.086
	SRR3591709	Stem	2.601
	SRR3591710	White floral bud	0.293
	SRR3591711	White flower	0.724
	SRR3591712	Green floral bud	0.242
	SRR3591713	Yellow flower	0.177
SRP173429	SRR8316895	Juvenile bud stage	0.564
	SRR8316896	Juvenile bud stage	1.074
	SRR8316897	Juvenile bud stage	0.419
	SRR8316894	Third green stage	0.049
	SRR8316900	Third green stage	0.132
	SRR8316901	Third green stage	0.138
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.065
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.193
	SRR8316906	Gold flowering stage	0.106
	SRR8316907	Gold flowering stage	0.177
	SRR8316908	Gold flowering stage	0.238
SRP132670	SRR6706286	Control	0.293
	SRR6706287	Light intensity 50%	0.273
	SRR6706288	Light intensity 20%	0.168
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.105
	CNS0095593	Slightly white alabastrum(diploid) 2	0.782
	CNS0095594	Slightly white alabastrum(diploid) 3	1.396
	CNS0095595	Whole white alabastrum(diploid) 2	0.204
	CNS0095596	Whole white alabastrum(diploid) 3	0.143
	CNS0095597	Whole white alabastrum(diploid) 4	0.033
	CNS0095598	Silvery flower (diploied) 1	1.331
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.369
	CNS0095601	Golden flower (diploid) 1	0.551
	CNS0095602	Golden flower (diploid) 2	0.649
	CNS0095603	Golden flower (diploid) 3	0.091
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.238
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.567
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.639
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.685
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.135
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.093
	CNS0095613	Golden flower (tetraploid) 1	0.184
	CNS0095614	Golden flower (tetraploid) 2	0.470
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.625
	CRR073299	Stem 3	0.299
	CRR073300	Leaf 1	0.056
	CRR073301	Leaf 2	0.108
	CRR073302	Leaf 3	0.072
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.102
	CRR073306	Third green 1	0.206
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.209
	CRR073312	Silver flowering 1	0.056
	CRR073313	Silver flowering 2	0.068
	CRR073314	Silver flowering 3	0.201
	CRR073315	Gold flowering 1	0.507
	CRR073316	Gold flowering 2	0.358
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	4.016
	CRR073319	Tawny withering 2	0.945
	CRR073320	Tawny withering 3	4.372