Gene detail

Detail information of GWHGAAZE014506

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010692427.1	7.8876E-88	PREDICTED: histone acetyltransferase HAC1-like isoform X2 [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|Q9LG11\|HAC4_ARATH	2E-75	Histone acetyltransferase HAC4
trEMBL	tr\|A0A067KM87\|A0A067KM87_JATCU	6E-87	Uncharacterized protein {ECO:0000313\|EMBL:KDP32924.1}
TAIR10	AT1G55970.1	1E-66	histone acetyltransferase of the CBP family 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	13098419	13099899	+
GWHAAZE00000004	mRNA	13098419	13099899	+
GWHAAZE00000004	exon	13098419	13098561	+
GWHAAZE00000004	exon	13098678	13098972	+
GWHAAZE00000004	exon	13099726	13099899	+
GWHAAZE00000004	CDS	13098419	13098561	+
GWHAAZE00000004	CDS	13098678	13098972	+
GWHAAZE00000004	CDS	13099726	13099899	+

Transcript Sequence
>GWHTAAZE014520 ATTGGATATCTTGATTATTGCAAGAAGCGAGGTTTTGTAAACTGCCATATATGGGCTTGCCCTCCTTTAAAAGGGGACGACTATATCTTTTATTGCCATCCAGAGACCCAGAAAGAACCAAAGTCGGATAAACTGCGGGCGTGGTATAAGTCTATGCTAAGAAAAGCAGCCAGAGATAACATTGTTCTGGATTACAGTAATTTATATGACAAGTTCTTTGTCCCTCATGGAGAGTGCAACAAGAAGGTAACTGCAGCTCGTTTGCCTTATTTTGATGGAGACTATTGGTCAGATGCTGCTCAAATTATAGTTAAGAAAGTTGGTTTAGAAAGTGGAGGATCACAGAAGGTGAAAAGGCAAATCACGAAGAGAACTGCTAAAGCCATGGGACACAACACTCCTAGTGATGTTACGAAAGATATTCTTGTGATGCAAGAATTAGGAGAAACCATATCACATTCGAAGGAAGATTTTATTGTTGTCCACTTACAATTCACATGTATGCATTGCCATGAAGTAATATTACCTGGAACCCAATGGTTTTGCAATCAATGCAAAAAATTTCAGCTATGTCCAAGGTATGATAACGGTTTCTGCTTCTTCACATCTTGA

Network for GWHGAAZE014506

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08214.12	HAT_KAT11	1	98	1.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04498	EP300, CREBBP, KAT3	Wnt signaling pathway	map04310
		Notch signaling pathway	map04330
		TGF-beta signaling pathway	map04350
		JAK-STAT signaling pathway	map04630
		HIF-1 signaling pathway	map04066
		FoxO signaling pathway	map04068
		cAMP signaling pathway	map04024
		Cell cycle	map04110
		Adherens junction	map04520
		Glucagon signaling pathway	map04922
		Growth hormone synthesis, secretion and action	map04935
		Thyroid hormone signaling pathway	map04919
		Melanogenesis	map04916
		Long-term potentiation	map04720

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0016573	biological_process	histone acetylation
GO:0004402	molecular_function	histone acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.143
	SRR3591706	second leaf	0.035
	SRR3591707	mature leaf	0.433
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	1.323
	SRR3591710	White floral bud	1.923
	SRR3591711	White flower	2.069
	SRR3591712	Green floral bud	2.338
	SRR3591713	Yellow flower	2.468
SRP173429	SRR8316895	Juvenile bud stage	1.275
	SRR8316896	Juvenile bud stage	2.511
	SRR8316897	Juvenile bud stage	0.800
	SRR8316894	Third green stage	0.799
	SRR8316900	Third green stage	2.917
	SRR8316901	Third green stage	1.578
	SRR8316898	Complete white stage	0.899
	SRR8316899	Complete white stage	1.477
	SRR8316903	Complete white stage	1.079
	SRR8316902	Silver flowering stage	0.990
	SRR8316904	Silver flowering stage	1.241
	SRR8316905	Silver flowering stage	0.477
	SRR8316906	Gold flowering stage	3.916
	SRR8316907	Gold flowering stage	1.766
	SRR8316908	Gold flowering stage	0.842
SRP132670	SRR6706286	Control	0.065
	SRR6706287	Light intensity 50%	0.173
	SRR6706288	Light intensity 20%	0.333
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.394
	CNS0095593	Slightly white alabastrum(diploid) 2	0.616
	CNS0095594	Slightly white alabastrum(diploid) 3	1.217
	CNS0095595	Whole white alabastrum(diploid) 2	3.357
	CNS0095596	Whole white alabastrum(diploid) 3	2.515
	CNS0095597	Whole white alabastrum(diploid) 4	4.290
	CNS0095598	Silvery flower (diploied) 1	1.697
	CNS0095599	Silvery flower (diploied) 2	1.796
	CNS0095600	Silvery flower (diploied) 3	2.830
	CNS0095601	Golden flower (diploid) 1	1.897
	CNS0095602	Golden flower (diploid) 2	1.436
	CNS0095603	Golden flower (diploid) 3	1.931
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.821
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.809
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.706
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.676
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.550
	CNS0095610	Silvery flower (tetraploid) 1	2.076
	CNS0095611	Silvery flower (tetraploid) 2	2.499
	CNS0095612	Silvery flower (tetraploid) 3	0.631
	CNS0095613	Golden flower (tetraploid) 1	0.459
	CNS0095614	Golden flower (tetraploid) 2	0.460
	CNS0095615	Golden flower (tetraploid) 3	0.821
CRA001975	CRR073297	Stem 1	0.628
	CRR073298	Stem 2	0.612
	CRR073299	Stem 3	0.307
	CRR073300	Leaf 1	0.954
	CRR073301	Leaf 2	0.282
	CRR073302	Leaf 3	0.378
	CRR073303	Juvenile bud 1	0.371
	CRR073304	Juvenile bud 2	0.096
	CRR073305	Juvenile bud 3	0.191
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.064
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.147
	CRR073311	Second white 3	0.571
	CRR073312	Silver flowering 1	0.038
	CRR073313	Silver flowering 2	0.020
	CRR073314	Silver flowering 3	0.075
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.478
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.308
	CRR073319	Tawny withering 2	0.658
	CRR073320	Tawny withering 3	0.531