Gene detail

Detail information of GWHGAAZE014498

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002533638.1	0	ATP binding protein, putative [Ricinus communis]
Swissprot	tr\|Q9FFW5\|PERK8_ARATH	0	Proline-rich receptor-like protein kinase PERK8
trEMBL	tr\|B9T5W9\|B9T5W9_RICCO	0	ATP binding protein, putative {ECO:0000313\|EMBL:EEF28741.1}
TAIR10	AT5G38560.1	2E-166	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	12958277	12963261	+
GWHAAZE00000004	mRNA	12958277	12963261	+
GWHAAZE00000004	exon	12958277	12959162	+
GWHAAZE00000004	exon	12959721	12960128	+
GWHAAZE00000004	exon	12960756	12960845	+
GWHAAZE00000004	exon	12960977	12961047	+
GWHAAZE00000004	exon	12961287	12961363	+
GWHAAZE00000004	exon	12961737	12961884	+
GWHAAZE00000004	exon	12962649	12962771	+
GWHAAZE00000004	exon	12962998	12963261	+
GWHAAZE00000004	CDS	12958277	12959162	+
GWHAAZE00000004	CDS	12959721	12960128	+
GWHAAZE00000004	CDS	12960756	12960845	+
GWHAAZE00000004	CDS	12960977	12961047	+
GWHAAZE00000004	CDS	12961287	12961363	+
GWHAAZE00000004	CDS	12961737	12961884	+
GWHAAZE00000004	CDS	12962649	12962771	+
GWHAAZE00000004	CDS	12962998	12963186	+
GWHAAZE00000004	three_prime_UTR	12963187	12963261	+

Transcript Sequence
>GWHTAAZE014512 ATGCATTTGGTTTGTTTACAAGGAAAAATAAAAATAAAGATGGCTTCAACATCACCTTCCCCAAATCCTTCTCCTACAACTGTTCCACCAGCTTCCCCTGCTACTTCACCACCCCCACCACTATCTAATTCTTCGATCGCTACACCTCCCCCTTCACTAACTCAACCAAATCAGACTTCTAACTCACCTCCTCCTTTAGCCTCTTCACCTCCTAATTCTTTTACCCCACCTCCTCAATTCCCTCCACCGGTTGCCCCTCCTCCATCCCCACCACAACCTCTGCTTCCACCGGCAACACCCCCACCAACCTCATCACCTCCACCATCACAACCTTCATCCCCACCGGCAACTTCTCATGCCTCTCTTCCACCTGTAAATTCACCACCATCTCCAAATTTGCCCCCGCCACCATCTTTGGTTGGTATTCCTCCCCAACCATCCCCAGCCCCTTTAGTGGTAACCCCATCTTCTCCACCACCTCCTGCAAAAATCCCATCTACACCTTCCTCCAATTCCCCATTTCCACCACTTGCAAAGCCACCTGGAAATTATCCACCCTCTAAGAGTATCCCTCACATTTCTCCTCCTTCTCCCCCAAGAAATTCAACTGTCAATGGTAATACTCCTACCTCACCATTACCTTCTCTTCCCTCACATAAACCCACTGCAAAATCAACGCCTGCTTCAAATATTACCTCAAATACAAACGGAGATGCTGGTGGGCTAAAAGCTGGAGTTGGAGTGGCAATTAGCATTCTAGTGGGATTTGTGTTACTTATTCTTTTTCTGATGGCTGTGTGGATTGCACGAAAATGTAAGAAAAGGGGATCTAGATTAAATGTTGGGTATATCATGCCTTCGCCATTTGCTTCCTCCCAAAATTCAGATTCATCATTCCTAAGTCCCCGAGAGTCAGGTCACCTTGCTGGAAGTTCTTCAGGAAGCAAATTCATGTACTCACCAGAGCATGGTGGTGTGGGGAATTCAAGGCCTTGGTTCACTTATGAAGCATTAGCTGATGCCACAATTGGGTTTTCAGAAAGCAATCTTTTGGGTGAAGGTGGGTTTGGTTCCGTTTACAAAGGATTACTGCCAGGTGGAAGGGAAGTTGCTGTCAAACAACTGAAGATTGGTGGTGGACAAGGGGAGCGAGAGTTCAGGGCAGAAGTTGAGATCATTAGCCGAGTACATCATCGCCATTTGGTTTCACTTGTGGGTTACTGTATCTGCAGGGATCAAAGATTGCTTGTATATGACTATGTGCCAAACAACACCCTTCATTTCCATCTTCATGGTGACGGTAGGCTGGTAATCATGGATTGGGAAACCCGAGTTAAGGTTGCTGCTGGTGCTGCCCGTGGAATAGCTTACCTGCACGAGGACTGCCATCCTCGGATCATTCACAGGGACATTAAGTCATCAAACATTCTCTTAGATAACAACTTTGACGCTTTGGTTGCAGATTTTGGACTTGCAAAGTTAACACTGGATACTTACACACACGTGACCACGCGAGTGATGGGAACCTTCGGATACATGGCTCCAGAGTATGCATCAAGCGGCAAGTTGACTGAGAAGTCTGATGTATATTCGTACGGGGTGGTGCTTTTAGAGCTCATCACTGGTCGTAAGCCTGTGGACTCATCTCAGCCACTGGGTCAGGAGAGCCTGGTTGAATGGGCTCGACCATTGCTTAAACGAGCACTTGATGATCAAGACTTTGAGGAGCTGGTAGACCCAAGGCTGAACAAGGACTTTATTAAAATTGAAATGTTCCGCATGATCGAAGCCGCAGCAGCTTGTGTGGTGAGAGCTTTAGATTCGATATTTGACTTATCAGATCTAGCCAATGGAATGAAACCTGGGCAAAGTGAAGTTTTTGATTCAAGGGAACATTCTGCACAAATAAGAATGCTTCAGAGGATGGCCTTTGGAAGTCAAGACTACAGTTCAGAAATTTTCAGTTCTCAAAACAGCTGGAGGAGACTCTAATTTAGGCGTAAATGCATAATCATTGGTCAAGGAAAAAACGCGTTTAAACAATAGCCTTGTAATGAATGCTGTACG

Network for GWHGAAZE014498

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	346	550	1.90E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.335
	SRR3591706	second leaf	5.179
	SRR3591707	mature leaf	4.709
	SRR3591708	Shoot apex	11.995
	SRR3591709	Stem	9.521
	SRR3591710	White floral bud	9.694
	SRR3591711	White flower	8.302
	SRR3591712	Green floral bud	9.457
	SRR3591713	Yellow flower	3.173
SRP173429	SRR8316895	Juvenile bud stage	7.183
	SRR8316896	Juvenile bud stage	8.155
	SRR8316897	Juvenile bud stage	3.916
	SRR8316894	Third green stage	5.152
	SRR8316900	Third green stage	10.439
	SRR8316901	Third green stage	7.622
	SRR8316898	Complete white stage	2.082
	SRR8316899	Complete white stage	11.205
	SRR8316903	Complete white stage	8.493
	SRR8316902	Silver flowering stage	3.311
	SRR8316904	Silver flowering stage	5.084
	SRR8316905	Silver flowering stage	1.239
	SRR8316906	Gold flowering stage	3.806
	SRR8316907	Gold flowering stage	3.661
	SRR8316908	Gold flowering stage	4.603
SRP132670	SRR6706286	Control	9.725
	SRR6706287	Light intensity 50%	10.136
	SRR6706288	Light intensity 20%	10.810
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.518
	CNS0095593	Slightly white alabastrum(diploid) 2	4.466
	CNS0095594	Slightly white alabastrum(diploid) 3	3.031
	CNS0095595	Whole white alabastrum(diploid) 2	3.117
	CNS0095596	Whole white alabastrum(diploid) 3	2.358
	CNS0095597	Whole white alabastrum(diploid) 4	2.711
	CNS0095598	Silvery flower (diploied) 1	8.177
	CNS0095599	Silvery flower (diploied) 2	5.789
	CNS0095600	Silvery flower (diploied) 3	7.779
	CNS0095601	Golden flower (diploid) 1	6.977
	CNS0095602	Golden flower (diploid) 2	7.238
	CNS0095603	Golden flower (diploid) 3	7.441
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.912
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.078
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.682
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.779
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.468
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.700
	CNS0095610	Silvery flower (tetraploid) 1	6.841
	CNS0095611	Silvery flower (tetraploid) 2	8.344
	CNS0095612	Silvery flower (tetraploid) 3	7.973
	CNS0095613	Golden flower (tetraploid) 1	3.842
	CNS0095614	Golden flower (tetraploid) 2	6.255
	CNS0095615	Golden flower (tetraploid) 3	4.648
CRA001975	CRR073297	Stem 1	11.953
	CRR073298	Stem 2	10.853
	CRR073299	Stem 3	5.053
	CRR073300	Leaf 1	8.673
	CRR073301	Leaf 2	9.247
	CRR073302	Leaf 3	3.524
	CRR073303	Juvenile bud 1	2.669
	CRR073304	Juvenile bud 2	1.450
	CRR073305	Juvenile bud 3	4.073
	CRR073306	Third green 1	0.547
	CRR073307	Third green 2	0.432
	CRR073308	Third green 3	0.627
	CRR073309	Second white 1	0.210
	CRR073310	Second white 2	0.436
	CRR073311	Second white 3	0.469
	CRR073312	Silver flowering 1	0.226
	CRR073313	Silver flowering 2	0.203
	CRR073314	Silver flowering 3	0.678
	CRR073315	Gold flowering 1	1.052
	CRR073316	Gold flowering 2	3.476
	CRR073317	Gold flowering 3	1.309
	CRR073318	Tawny withering 1	6.347
	CRR073319	Tawny withering 2	8.520
	CRR073320	Tawny withering 3	10.339