Detail information of GWHGAAZE014488


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007033417.10Methylenetetrahydrofolate reductase family protein isoform 1 [Theobroma cacao]
Swissprottr|Q6NKX1|PROD2_ARATH0Proline dehydrogenase 2, mitochondrial (Precursor)
trEMBLtr|A0A061EI66|A0A061EI66_THECC0Methylenetetrahydrofolate reductase family protein isoform 1 {ECO:0000313|EMBL:EOY04343.1}
TAIR10AT5G38710.14E-143Methylenetetrahydrofolate reductase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1285352512855870-
GWHAAZE00000004mRNA1285352512855870-
GWHAAZE00000004exon1285352512853567-
GWHAAZE00000004exon1285369212853932-
GWHAAZE00000004exon1285402312854668-
GWHAAZE00000004exon1285532512855870-
GWHAAZE00000004CDS1285532512855870-
GWHAAZE00000004CDS1285402312854668-
GWHAAZE00000004CDS1285369212853932-
GWHAAZE00000004CDS1285352512853567-
Transcript Sequence

Network for GWHGAAZE014488

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01619.19Pro_dh1344682.70E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00318PRODH, fadM, putB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Arginine and proline metabolismmap00330

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.385
SRR3591706second leaf4.432
SRR3591707mature leaf34.235
SRR3591708Shoot apex22.679
SRR3591709Stem18.758
SRR3591710White floral bud279.339
SRR3591711White flower162.741
SRR3591712Green floral bud32.826
SRR3591713Yellow flower239.548
SRP173429 SRR8316895Juvenile bud stage 4.246
SRR8316896Juvenile bud stage 10.319
SRR8316897Juvenile bud stage 3.756
SRR8316894Third green stage 7.219
SRR8316900Third green stage 41.578
SRR8316901Third green stage 59.449
SRR8316898Complete white stage 86.765
SRR8316899Complete white stage 70.945
SRR8316903Complete white stage 150.957
SRR8316902Silver flowering stage124.173
SRR8316904Silver flowering stage115.912
SRR8316905Silver flowering stage15.787
SRR8316906Gold flowering stage 95.275
SRR8316907Gold flowering stage 77.569
SRR8316908Gold flowering stage 58.353
SRP132670SRR6706286Control68.594
SRR6706287Light intensity 50%92.444
SRR6706288Light intensity 20%80.765
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.046
CNS0095593Slightly white alabastrum(diploid) 238.640
CNS0095594Slightly white alabastrum(diploid) 326.102
CNS0095595Whole white alabastrum(diploid) 236.174
CNS0095596Whole white alabastrum(diploid) 333.966
CNS0095597Whole white alabastrum(diploid) 428.204
CNS0095598Silvery flower (diploied) 127.904
CNS0095599Silvery flower (diploied) 241.287
CNS0095600Silvery flower (diploied) 367.110
CNS0095601Golden flower (diploid) 154.254
CNS0095602Golden flower (diploid) 2134.526
CNS0095603Golden flower (diploid) 3133.895
CNS0095604Slightly white alabastrum(tetraploid) 127.427
CNS0095605Slightly white alabastrum(tetraploid) 216.871
CNS0095606Slightly white alabastrum(tetraploid) 362.154
CNS0095607Whole white alabastrum(tetraploid) 122.305
CNS0095608Whole white alabastrum(tetraploid) 233.923
CNS0095609Whole white alabastrum(tetraploid) 342.632
CNS0095610Silvery flower (tetraploid) 1101.004
CNS0095611Silvery flower (tetraploid) 297.697
CNS0095612Silvery flower (tetraploid) 3169.409
CNS0095613Golden flower (tetraploid) 1192.084
CNS0095614Golden flower (tetraploid) 295.100
CNS0095615Golden flower (tetraploid) 31119.246
CRA001975CRR073297Stem 114.880
CRR073298Stem 221.250
CRR073299Stem 314.358
CRR073300Leaf 173.262
CRR073301Leaf 278.524
CRR073302Leaf 347.839
CRR073303Juvenile bud 136.459
CRR073304Juvenile bud 257.981
CRR073305Juvenile bud 360.448
CRR073306Third green 1142.170
CRR073307Third green 2158.171
CRR073308Third green 3150.280
CRR073309Second white 163.357
CRR073310Second white 2112.954
CRR073311Second white 3132.380
CRR073312Silver flowering 1189.609
CRR073313Silver flowering 2104.648
CRR073314Silver flowering 385.360
CRR073315Gold flowering 1107.368
CRR073316Gold flowering 2184.477
CRR073317Gold flowering 375.395
CRR073318Tawny withering 128.716
CRR073319Tawny withering 243.644
CRR073320Tawny withering 316.740