Gene detail

Detail information of GWHGAAZE014480

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006373519.1	phosphogluconate dehydrogenase family protein [Populus trichocarpa]
Swissprot	tr\|Q9FWA3\|6GPD3_ARATH	6-phosphogluconate dehydrogenase, decarboxylating 3
trEMBL	tr\|B9N1W3\|B9N1W3_POPTR	6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256\|PIRNR:PIRNR000109}
TAIR10	AT3G02360.2	6-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	12769095	12770564	+
GWHAAZE00000004	mRNA	12769095	12770564	+
GWHAAZE00000004	exon	12769095	12770564	+
GWHAAZE00000004	CDS	12769095	12770564	+

Transcript Sequence
>GWHTAAZE014494 ATGGCTGCTCCACCCTCAAAGCCAACAAGAATAGGCCTTGCCGGTCTTGCTGTCATGGGCCAAAACCTAGCGCTCAACATTGCTGAGAAAGGCTTTCCCATTTCGATTTACAACCGAACTACCTCCAAAGTTGACGAGACCGTCAAACGAGCTAAACAAGAAGGAGATCTTCCCGTGTTTGGATTTCATGACCCCGAATCTTTCGTTCATTCAGTCCAAACGCCTCGGGTTATCATCATGCTTGTTAAGGCAGGGGTACCCGTCGATCAATCCATTAAAACCCTATCTGCTTACATGGAGAAGGGTGACTGTATCATAGATGGTGGCAATGAGTGGTACGAGAATACCGAGAGGAGAGAGAAATCCATGGCTAAGCTTGGCCTTTTGTACCTCGGGATGGGAGTTTCTGGTGGTGAAGAAGGGGCTCGACATGGTCCCTCTTTGATGCCTGGTGGTTCATTCGAAGCTTACAAATACATCGAAGACATCGTTCTTAAGGTTGCGGCTCAAGTTCCCGACGGTGGGCCTTGTGTGACTTACATTGGCAAAGGAGGATCAGGTAATTTCGTTAAGATGGTTCATAACGGAATCGAATATGGTGATATGCAGCTAATTGCTGAGGCTTATGACGTGTTGAAATCAGTTGGAAAGCTGTCAAATGAGGAACTACACGGTGTTTTCTCTGAATGGAACAAGGGGGAGCTCTTAAGTTTCTTGATAGAAATCACTGCTGATATTTTCAGCATTAAGGATGATAAGGGAGAGGGTTATTTGGTTGACAAGGTATTGGACAAAACCGGCATGAAGGGGACTGGCAAATGGACGGTTCAACAAGCTGCTGACCTGTCAGTGGCGGCTCCCACAATCGCGTCGTCTCTGGACTCAAGATTCCTTAGTGGGTTGAAGGAGGAAAGGGTTGAAGCATCCAAAGTCTTTAAATCAGGTGACTTTGACAATATCTTGACTAATCAGACGGTGGACAAGGAGAAGTTGATCGATGATGTGAAGCAAGCTCTATATGCATCAAAAATATGCAGTTATGCACAAGGGATGAATCTGATCCGTGCAAAGAGCAAAGAGAAAGGATGGGACTTGGAATTGGGCGAATTGGCTAGGATTTGGAAAGGGGGTTGCATCATTCGAGCTGTGTTTTTGGACCGAATCAAAATGGCCTATGACAGAAACCCGGATCTGGCTAACCTCTTGGTGGACCCTGAGTTTGCAAGGGAAATAATTGAGCGACAAAATGCATGGCGAAGAGTTGTATGCCTTGCTATAAACTCGGGCACTAGCACCCCGGGTATGTCCACTAGTCTTGCCTATTTCGATAGTTACAGAAGAGAGAGATTGCCAGCTAATTTGGTGCAAGCACAAAGAGATTACTTCGGTGCTCATACTTATGAAAGGACCGATATGCCAGGGTGGTTTCACACTGAGTGGTTCAAGATTGCTAATCTGAGAAATAAATGA

Network for GWHGAAZE014480

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03446.16	NAD_binding_2	10	182	1.10E-44
PF00393.20	6PGD	187	480	8.70E-127

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00033	PGD, gnd, gntZ	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pentose phosphate pathway	map00030
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006098	biological_process	pentose-phosphate shunt
GO:0004616	molecular_function	phosphogluconate dehydrogenase (decarboxylating) activity
GO:0050661	molecular_function	NADP binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.391
	SRR3591706	second leaf	5.983
	SRR3591707	mature leaf	0.535
	SRR3591708	Shoot apex	4.424
	SRR3591709	Stem	0.574
	SRR3591710	White floral bud	1.333
	SRR3591711	White flower	0.593
	SRR3591712	Green floral bud	4.778
	SRR3591713	Yellow flower	0.444
SRP173429	SRR8316895	Juvenile bud stage	3.877
	SRR8316896	Juvenile bud stage	3.423
	SRR8316897	Juvenile bud stage	1.566
	SRR8316894	Third green stage	1.224
	SRR8316900	Third green stage	3.434
	SRR8316901	Third green stage	3.037
	SRR8316898	Complete white stage	0.563
	SRR8316899	Complete white stage	5.527
	SRR8316903	Complete white stage	1.498
	SRR8316902	Silver flowering stage	0.285
	SRR8316904	Silver flowering stage	0.445
	SRR8316905	Silver flowering stage	0.190
	SRR8316906	Gold flowering stage	0.192
	SRR8316907	Gold flowering stage	0.673
	SRR8316908	Gold flowering stage	0.425
SRP132670	SRR6706286	Control	4.150
	SRR6706287	Light intensity 50%	4.154
	SRR6706288	Light intensity 20%	5.235
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.678
	CNS0095593	Slightly white alabastrum(diploid) 2	6.502
	CNS0095594	Slightly white alabastrum(diploid) 3	8.691
	CNS0095595	Whole white alabastrum(diploid) 2	15.146
	CNS0095596	Whole white alabastrum(diploid) 3	2.199
	CNS0095597	Whole white alabastrum(diploid) 4	10.029
	CNS0095598	Silvery flower (diploied) 1	1.500
	CNS0095599	Silvery flower (diploied) 2	1.938
	CNS0095600	Silvery flower (diploied) 3	1.305
	CNS0095601	Golden flower (diploid) 1	0.071
	CNS0095602	Golden flower (diploid) 2	0.452
	CNS0095603	Golden flower (diploid) 3	0.399
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.387
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.223
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.042
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.686
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.904
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.185
	CNS0095610	Silvery flower (tetraploid) 1	0.483
	CNS0095611	Silvery flower (tetraploid) 2	0.313
	CNS0095612	Silvery flower (tetraploid) 3	1.752
	CNS0095613	Golden flower (tetraploid) 1	0.354
	CNS0095614	Golden flower (tetraploid) 2	0.113
	CNS0095615	Golden flower (tetraploid) 3	0.055
CRA001975	CRR073297	Stem 1	7.536
	CRR073298	Stem 2	6.482
	CRR073299	Stem 3	9.354
	CRR073300	Leaf 1	5.151
	CRR073301	Leaf 2	4.518
	CRR073302	Leaf 3	6.234
	CRR073303	Juvenile bud 1	9.788
	CRR073304	Juvenile bud 2	11.600
	CRR073305	Juvenile bud 3	6.614
	CRR073306	Third green 1	3.178
	CRR073307	Third green 2	5.764
	CRR073308	Third green 3	3.879
	CRR073309	Second white 1	1.716
	CRR073310	Second white 2	2.152
	CRR073311	Second white 3	2.103
	CRR073312	Silver flowering 1	0.340
	CRR073313	Silver flowering 2	0.345
	CRR073314	Silver flowering 3	0.577
	CRR073315	Gold flowering 1	2.233
	CRR073316	Gold flowering 2	2.059
	CRR073317	Gold flowering 3	6.106
	CRR073318	Tawny withering 1	5.062
	CRR073319	Tawny withering 2	1.306
	CRR073320	Tawny withering 3	15.021