Detail information of GWHGAAZE014437


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009797625.13.71289E-74PREDICTED: ninja-family protein AFP3-like [Nicotiana sylvestris]
Swissprottr|Q94F39|AFP3_ARATH2E-43Ninja-family protein AFP3
trEMBLtr|M0ZM68|M0ZM68_SOLTU6E-74Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400003712}
TAIR10AT3G29575.43E-28ABI five binding protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1192602011930628-
GWHAAZE00000004mRNA1192602011930628-
GWHAAZE00000004exon1192999811930628-
GWHAAZE00000004exon1192835011928721-
GWHAAZE00000004exon1192812711928175-
GWHAAZE00000004exon1192602011926215-
GWHAAZE00000004CDS1192999811930628-
GWHAAZE00000004CDS1192835011928721-
GWHAAZE00000004CDS1192812711928175-
GWHAAZE00000004CDS1192621511926215-
GWHAAZE00000004three_prime_UTR1192602011926214-
Transcript Sequence

Network for GWHGAAZE014437

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07897.12EAR45794.50E-16
PF16136.6NINJA_B1051995.40E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.942
SRR3591706second leaf8.202
SRR3591707mature leaf54.488
SRR3591708Shoot apex11.461
SRR3591709Stem26.551
SRR3591710White floral bud12.847
SRR3591711White flower23.222
SRR3591712Green floral bud17.742
SRR3591713Yellow flower11.407
SRP173429 SRR8316895Juvenile bud stage 15.687
SRR8316896Juvenile bud stage 21.559
SRR8316897Juvenile bud stage 9.376
SRR8316894Third green stage 16.432
SRR8316900Third green stage 59.130
SRR8316901Third green stage 58.357
SRR8316898Complete white stage 12.481
SRR8316899Complete white stage 73.198
SRR8316903Complete white stage 21.438
SRR8316902Silver flowering stage19.487
SRR8316904Silver flowering stage19.677
SRR8316905Silver flowering stage13.292
SRR8316906Gold flowering stage 24.873
SRR8316907Gold flowering stage 27.272
SRR8316908Gold flowering stage 27.432
SRP132670SRR6706286Control114.620
SRR6706287Light intensity 50%117.159
SRR6706288Light intensity 20%119.887
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.057
CNS0095593Slightly white alabastrum(diploid) 235.250
CNS0095594Slightly white alabastrum(diploid) 324.708
CNS0095595Whole white alabastrum(diploid) 226.526
CNS0095596Whole white alabastrum(diploid) 324.275
CNS0095597Whole white alabastrum(diploid) 419.245
CNS0095598Silvery flower (diploied) 117.660
CNS0095599Silvery flower (diploied) 217.866
CNS0095600Silvery flower (diploied) 324.580
CNS0095601Golden flower (diploid) 115.170
CNS0095602Golden flower (diploid) 213.986
CNS0095603Golden flower (diploid) 315.286
CNS0095604Slightly white alabastrum(tetraploid) 137.869
CNS0095605Slightly white alabastrum(tetraploid) 224.834
CNS0095606Slightly white alabastrum(tetraploid) 387.145
CNS0095607Whole white alabastrum(tetraploid) 122.688
CNS0095608Whole white alabastrum(tetraploid) 216.692
CNS0095609Whole white alabastrum(tetraploid) 338.991
CNS0095610Silvery flower (tetraploid) 123.318
CNS0095611Silvery flower (tetraploid) 214.246
CNS0095612Silvery flower (tetraploid) 33.077
CNS0095613Golden flower (tetraploid) 18.062
CNS0095614Golden flower (tetraploid) 210.586
CNS0095615Golden flower (tetraploid) 36.390
CRA001975CRR073297Stem 118.256
CRR073298Stem 218.587
CRR073299Stem 314.051
CRR073300Leaf 123.629
CRR073301Leaf 233.270
CRR073302Leaf 321.864
CRR073303Juvenile bud 123.816
CRR073304Juvenile bud 219.557
CRR073305Juvenile bud 340.475
CRR073306Third green 125.840
CRR073307Third green 221.930
CRR073308Third green 316.093
CRR073309Second white 14.418
CRR073310Second white 25.229
CRR073311Second white 33.642
CRR073312Silver flowering 19.007
CRR073313Silver flowering 28.967
CRR073314Silver flowering 36.832
CRR073315Gold flowering 116.379
CRR073316Gold flowering 217.637
CRR073317Gold flowering 318.994
CRR073318Tawny withering 113.961
CRR073319Tawny withering 211.044
CRR073320Tawny withering 316.190