Detail information of GWHGAAZE014434


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011006579.14.50757E-24PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like isoform X2 [Populus euphratica]
Swissprottr|Q9C909|RBG5_ARATH9E-20Glycine-rich RNA-binding protein 5, mitochondrial (Precursor)
trEMBLtr|A9PIG6|A9PIG6_POPTR2E-24Uncharacterized protein {ECO:0000313|EMBL:ERP52196.1}
TAIR10AT5G61030.15E-16glycine-rich RNA-binding protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1186784211868578-
GWHAAZE00000004mRNA1186784211868578-
GWHAAZE00000004exon1186848311868578-
GWHAAZE00000004exon1186784211868006-
GWHAAZE00000004CDS1186848311868578-
GWHAAZE00000004CDS1186784211868006-
Transcript Sequence

Network for GWHGAAZE014434

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_12401.70E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12741HNRNPA1_3 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.707
SRR3591706second leaf16.798
SRR3591707mature leaf18.131
SRR3591708Shoot apex39.755
SRR3591709Stem29.872
SRR3591710White floral bud18.095
SRR3591711White flower44.347
SRR3591712Green floral bud32.703
SRR3591713Yellow flower48.043
SRP173429 SRR8316895Juvenile bud stage 35.238
SRR8316896Juvenile bud stage 44.724
SRR8316897Juvenile bud stage 19.713
SRR8316894Third green stage 14.483
SRR8316900Third green stage 36.482
SRR8316901Third green stage 36.302
SRR8316898Complete white stage 5.560
SRR8316899Complete white stage 20.722
SRR8316903Complete white stage 6.985
SRR8316902Silver flowering stage7.177
SRR8316904Silver flowering stage6.622
SRR8316905Silver flowering stage3.463
SRR8316906Gold flowering stage 21.486
SRR8316907Gold flowering stage 28.935
SRR8316908Gold flowering stage 38.872
SRP132670SRR6706286Control61.430
SRR6706287Light intensity 50%63.053
SRR6706288Light intensity 20%67.008
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.822
CNS0095593Slightly white alabastrum(diploid) 226.412
CNS0095594Slightly white alabastrum(diploid) 333.853
CNS0095595Whole white alabastrum(diploid) 230.846
CNS0095596Whole white alabastrum(diploid) 316.984
CNS0095597Whole white alabastrum(diploid) 423.886
CNS0095598Silvery flower (diploied) 132.811
CNS0095599Silvery flower (diploied) 236.294
CNS0095600Silvery flower (diploied) 324.224
CNS0095601Golden flower (diploid) 122.900
CNS0095602Golden flower (diploid) 226.850
CNS0095603Golden flower (diploid) 325.513
CNS0095604Slightly white alabastrum(tetraploid) 130.008
CNS0095605Slightly white alabastrum(tetraploid) 225.840
CNS0095606Slightly white alabastrum(tetraploid) 345.307
CNS0095607Whole white alabastrum(tetraploid) 115.069
CNS0095608Whole white alabastrum(tetraploid) 214.163
CNS0095609Whole white alabastrum(tetraploid) 339.226
CNS0095610Silvery flower (tetraploid) 157.044
CNS0095611Silvery flower (tetraploid) 238.951
CNS0095612Silvery flower (tetraploid) 326.022
CNS0095613Golden flower (tetraploid) 134.317
CNS0095614Golden flower (tetraploid) 247.188
CNS0095615Golden flower (tetraploid) 311.128
CRA001975CRR073297Stem 123.541
CRR073298Stem 225.027
CRR073299Stem 327.292
CRR073300Leaf 120.744
CRR073301Leaf 217.738
CRR073302Leaf 321.896
CRR073303Juvenile bud 118.458
CRR073304Juvenile bud 222.715
CRR073305Juvenile bud 325.959
CRR073306Third green 15.020
CRR073307Third green 24.264
CRR073308Third green 34.001
CRR073309Second white 18.699
CRR073310Second white 26.246
CRR073311Second white 36.296
CRR073312Silver flowering 13.010
CRR073313Silver flowering 25.032
CRR073314Silver flowering 38.468
CRR073315Gold flowering 14.363
CRR073316Gold flowering 29.370
CRR073317Gold flowering 38.538
CRR073318Tawny withering 110.633
CRR073319Tawny withering 211.201
CRR073320Tawny withering 310.886