Gene detail

Detail information of GWHGAAZE014418

Functional Annotation

Database	Orthologs	Annotation
Nr	AES77608.2	casein lytic proteinase B3 [Medicago truncatula]
Swissprot	tr\|Q9LF37\|CLPB3_ARATH	Chaperone protein ClpB3, chloroplastic (Precursor)
trEMBL	tr\|G7L491\|G7L491_MEDTR	Casein lytic proteinase B3 {ECO:0000313\|EMBL:AES77608.2}
TAIR10	AT5G15450.1	casein lytic proteinase B3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11629384	11635697	-
GWHAAZE00000004	mRNA	11629384	11635697	-
GWHAAZE00000004	exon	11635641	11635697	-
GWHAAZE00000004	exon	11633943	11634161	-
GWHAAZE00000004	exon	11633122	11633359	-
GWHAAZE00000004	exon	11632671	11632866	-
GWHAAZE00000004	exon	11632430	11632484	-
GWHAAZE00000004	exon	11632148	11632298	-
GWHAAZE00000004	exon	11631535	11631843	-
GWHAAZE00000004	exon	11630940	11631205	-
GWHAAZE00000004	exon	11629864	11630790	-
GWHAAZE00000004	exon	11629384	11629707	-
GWHAAZE00000004	CDS	11635641	11635697	-
GWHAAZE00000004	CDS	11633943	11634161	-
GWHAAZE00000004	CDS	11633122	11633359	-
GWHAAZE00000004	CDS	11632671	11632866	-
GWHAAZE00000004	CDS	11632430	11632484	-
GWHAAZE00000004	CDS	11632148	11632298	-
GWHAAZE00000004	CDS	11631535	11631843	-
GWHAAZE00000004	CDS	11630940	11631205	-
GWHAAZE00000004	CDS	11629864	11630790	-
GWHAAZE00000004	CDS	11629384	11629707	-

Transcript Sequence
>GWHTAAZE014432 ATGGCAGTAGAAGTGGAACGGTGGGGCGACGGTGGAAGTGGGATAGTGGTGATGAAAATTACTCAACAAGAGTTCACGGAAATGGCTTGGCAAGCAATTGTTTCTTCTCCAGAAGTGGCAAAAGAGAACAAAAATCAAGTAGTTGAGACAGAGCATTTGATGAAGGTTTTGCTGGAGCAGAAGAATGGGCTTGCCCGTCGTATCTTCTCCAAGGCTGGTATAGACAATACCCGTCTTCTTGATTTTACTGATAAGTTCATTCAACGACAACCAAAGGTTTTTGGCGAGTCAGCTGGCGCAATGTTAGGGCGGGATTTGGAAGCCCTGATACAGCGAGCCAGGGAGTACAAGAAAGAGTACGGGGATTCATTTGTGTCAGTTGAACATTTGGTGCTTGGTTTTTTGCAAGATAAAAGATTTGGAAAGCAATTATTTAATGATTTTCAGATTTCCCTGAAAGCCTTAACAAATGCAATACAAGCCATAAGGGGACGGCAAACGGTTATTGATCAAGATCCCGAGGGCAAATATGAATCACTGGAGAAATATGGCAAAGATTTGACTGCCATGGCAAGAGCCGGAAAGCTTGACCCTGTGATAGGAAGAGATGATGAAATACGTAGATGCATCCAGATTCTCTCCAGGAGAACAAAGAACAATCCTGTGCTAATCGGTGAGCCAGGTGTTGGAAAAACTGCTATTTCTGAGGGGCTTGCCCAAAGAATTGTTCAAGGAGATGTCCCTCAAGCTTTGATGAACCGGAAGTTAATATCCCTGGACATGGGTGCCCTCATTGCTGGGGCAAAATACCGCGGAGAATTTGAAGACAGACTAAAAGCCGTGCTCAAGGAAGTTACAGAATCAGACGGGCAAATTATTCTCTTCATTGATGAGATCCACACAGTTGTTGGAGCAGGTGCCACCAGTGGTGCAATGGATGCTGGAAATCTCTTGAAGCCCATGCTTGGTCGTGGAGAGCTGCGTTGTATTGGTGCTACAACTCTGGATGAATATCGTAAGTATATTGAGAAAGATCCGGCTTTGGAGCGTCGTTTCCAGCAAGTTTATGTTGATCAACCTACAGTAGAAGATACAATTTCTATACTTCGTGGATTGCGTGAAAGATATGAATTGCACCATGGGGTGCGTATATCTGACAGTGCACTGGTTGAAGCTGCAATTCTCTCAGATCGTTACATTAGTGGTCGTTTTTTACCAGACAAAGCTATTGACCTGGTTGATGAAGCGGCTGCTAAGTTGAAAATGGAGATCACTTCAAAACCAACTGCACTTGATGAAATCAACCGTGCAGTGTTGAAGCTGGAGATGGAGAGGCTTTCTCTTACAAATGACACAGACAAAGCTTCGAGAGATAGGTTGAGTCGTCTTGAGGCAGAGTTGGATCTCTTAAAGGAGAGACAAACTGAGCTGAATGAACAGTGGGAACATGAAAAAAATGTTATGACTCGCCTGCAATCAATCAAAGAAGAGATTGACAGGGTAAATCTAGAGATCCAGCAGGCTGAGAGGGAGTATGATCTTAACCGTGCAGCTGAGTTGAAATATGGGAGCCTAAACTCTTTGCAGCGTCAACTTGAAACTGCGGAGAAAGAACTGGACGAGTATATGAAATCTGGTAAGTCAATGCTTAGAGAAGAAGTTACCGGGAGTGATATTGCCGAGATTGTCAGCAAATGGACTGGTATTCCTGTTTCCAAACTACAACAATCAGAGAGGGAGAAGCTGTTACATTTGGAGGAAGAACTACATAAACGTGTTGTAGGTCAAGATCCTGCAGTGAGATCCGTGGCCGAGGCTATCCAGAGATCTAGAGCAGGCCTGTCAGATCCTCACCGTCCAATAGCTAGTTTCATGTTCATGGGTCCCACAGGAGTTGGCAAAACGGAGCTAGCTAAGGCCCTTGCTTCTTATATGTTTAACACTGAAGAAGCCCTTGTTCGTATTGATATGAGCGAGTACATGGAAAAGCATGCGGTTTCGAGGTTGATAGGAGCTCCACCTGGTTATGTAGGGTACGAGGAAGGGGGACAGTTGACTGAGATAGTTCGCAGAAGGCCGTATGCTGTTATCTTATTTGATGAGATTGAAAAGGCCCATTCCGATGTATTCAATGTGTTTCTTCAAATACTTGATGACGGTAGAGTGACTGACTCACAGGGCCGCACTGTGAGTTTCACCAACACTGTTATCATTATGACTTCAAATGTGGGTTCACAATACATTCTCAATACAGATGATGACACCATCCCAAAGGAGACGGCATTTGAAACTATAAAGCAAAGGGTAATGGATGCTGCAAGATCGATTTTCCGTCCTGAGTTTATGAATCGCGTTGATGAGTACATCGTGTTCCAGCCTCTTGATCGTGACCAGATCAACAGTATTGTCAGATTACAGTTGGAAAGAGTGCAAAAGAGGATAGCGGACCGGAAGATGATTATACAAGTGACGGAAGCAGCGGTTCAACTCTTAGGAAATCTTGGGTATGACCCAAGCTATGGTGCTAGGCCGGTGAAGCGAGTGATCCAGCAAAATGTAGAAAATGAGCTAGCCAAGGGTATCTTGAGAGGAGAGTTTAAGGAGGAGGACACTGTGTCGATAGACACCGAGGTTACAGCATTTTCCAATGGCCAACTTCCCCAGCAAAAGCTAGTCTTTAGGAGATTGGAATCTGATTCGGATGCTGCAGCAGAAAACAGAGATCTCCTGCAGACTATCTGA

Network for GWHGAAZE014418

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02861.21	Clp_N	38	87	1.80E-12
PF02861.21	Clp_N	113	164	5.50E-12
PF00004.30	AAA	222	354	4.80E-13
PF17871.2	AAA_lid_9	361	463	1.70E-33
PF07724.15	AAA_2	619	787	6.80E-56
PF10431.10	ClpB_D2-small	794	873	2.40E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0019538	biological_process	protein metabolic process
GO:0009408	biological_process	response to heat
GO:0042026	biological_process	protein refolding
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.405
	SRR3591706	second leaf	19.254
	SRR3591707	mature leaf	23.147
	SRR3591708	Shoot apex	16.712
	SRR3591709	Stem	7.977
	SRR3591710	White floral bud	10.139
	SRR3591711	White flower	13.127
	SRR3591712	Green floral bud	18.383
	SRR3591713	Yellow flower	13.599
SRP173429	SRR8316895	Juvenile bud stage	14.678
	SRR8316896	Juvenile bud stage	17.124
	SRR8316897	Juvenile bud stage	7.007
	SRR8316894	Third green stage	7.172
	SRR8316900	Third green stage	25.195
	SRR8316901	Third green stage	18.994
	SRR8316898	Complete white stage	4.559
	SRR8316899	Complete white stage	23.624
	SRR8316903	Complete white stage	9.475
	SRR8316902	Silver flowering stage	6.700
	SRR8316904	Silver flowering stage	9.764
	SRR8316905	Silver flowering stage	4.369
	SRR8316906	Gold flowering stage	17.271
	SRR8316907	Gold flowering stage	16.304
	SRR8316908	Gold flowering stage	14.293
SRP132670	SRR6706286	Control	20.659
	SRR6706287	Light intensity 50%	20.824
	SRR6706288	Light intensity 20%	21.795
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.431
	CNS0095593	Slightly white alabastrum(diploid) 2	12.517
	CNS0095594	Slightly white alabastrum(diploid) 3	8.603
	CNS0095595	Whole white alabastrum(diploid) 2	10.753
	CNS0095596	Whole white alabastrum(diploid) 3	11.172
	CNS0095597	Whole white alabastrum(diploid) 4	9.593
	CNS0095598	Silvery flower (diploied) 1	18.869
	CNS0095599	Silvery flower (diploied) 2	12.422
	CNS0095600	Silvery flower (diploied) 3	29.599
	CNS0095601	Golden flower (diploid) 1	17.350
	CNS0095602	Golden flower (diploid) 2	29.577
	CNS0095603	Golden flower (diploid) 3	31.142
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.509
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.381
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.611
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.693
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.394
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.510
	CNS0095610	Silvery flower (tetraploid) 1	44.239
	CNS0095611	Silvery flower (tetraploid) 2	49.880
	CNS0095612	Silvery flower (tetraploid) 3	36.688
	CNS0095613	Golden flower (tetraploid) 1	19.866
	CNS0095614	Golden flower (tetraploid) 2	37.913
	CNS0095615	Golden flower (tetraploid) 3	17.924
CRA001975	CRR073297	Stem 1	34.515
	CRR073298	Stem 2	27.200
	CRR073299	Stem 3	25.676
	CRR073300	Leaf 1	29.719
	CRR073301	Leaf 2	25.252
	CRR073302	Leaf 3	22.009
	CRR073303	Juvenile bud 1	28.855
	CRR073304	Juvenile bud 2	20.315
	CRR073305	Juvenile bud 3	32.267
	CRR073306	Third green 1	5.446
	CRR073307	Third green 2	1.802
	CRR073308	Third green 3	4.638
	CRR073309	Second white 1	15.415
	CRR073310	Second white 2	14.937
	CRR073311	Second white 3	15.053
	CRR073312	Silver flowering 1	16.679
	CRR073313	Silver flowering 2	18.277
	CRR073314	Silver flowering 3	16.261
	CRR073315	Gold flowering 1	56.813
	CRR073316	Gold flowering 2	90.595
	CRR073317	Gold flowering 3	48.862
	CRR073318	Tawny withering 1	7.921
	CRR073319	Tawny withering 2	9.099
	CRR073320	Tawny withering 3	9.482