Detail information of GWHGAAZE014408


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009589734.10PREDICTED: probable ubiquitin conjugation factor E4 [Nicotiana tomentosiformis]
Swissprottr|Q9LF41|UBE4_ARATH0Probable ubiquitin conjugation factor E4
trEMBLtr|A0A068U3U3|A0A068U3U3_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02278.1}
TAIR10AT5G15400.10U-box domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1152448411536255-
GWHAAZE00000004mRNA1152448411536255-
GWHAAZE00000004exon1153542911536255-
GWHAAZE00000004exon1153423311534437-
GWHAAZE00000004exon1153343611533587-
GWHAAZE00000004exon1153302811533331-
GWHAAZE00000004exon1153098411531136-
GWHAAZE00000004exon1153020611530409-
GWHAAZE00000004exon1152966811529780-
GWHAAZE00000004exon1152942211529536-
GWHAAZE00000004exon1152614811526237-
GWHAAZE00000004exon1152584011526043-
GWHAAZE00000004exon1152565811525753-
GWHAAZE00000004exon1152544211525564-
GWHAAZE00000004exon1152523911525331-
GWHAAZE00000004exon1152497211525136-
GWHAAZE00000004exon1152475811524847-
GWHAAZE00000004exon1152448411524672-
GWHAAZE00000004CDS1153542911536255-
GWHAAZE00000004CDS1153423311534437-
GWHAAZE00000004CDS1153343611533587-
GWHAAZE00000004CDS1153302811533331-
GWHAAZE00000004CDS1153098411531136-
GWHAAZE00000004CDS1153020611530409-
GWHAAZE00000004CDS1152966811529780-
GWHAAZE00000004CDS1152942211529536-
GWHAAZE00000004CDS1152614811526237-
GWHAAZE00000004CDS1152584011526043-
GWHAAZE00000004CDS1152565811525753-
GWHAAZE00000004CDS1152544211525564-
GWHAAZE00000004CDS1152523911525331-
GWHAAZE00000004CDS1152497211525136-
GWHAAZE00000004CDS1152475811524847-
GWHAAZE00000004CDS1152448411524672-
Transcript Sequence

Network for GWHGAAZE014408

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10408.10Ufd2P_core2549224.40E-205
PF04564.16U-box93910097.30E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10597UBE4B, UFD2 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120

Gene Ontology

GO term OntologyName
GO:0016567biological_processprotein ubiquitination
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein transferase activity
GO:0034450molecular_functionubiquitin-ubiquitin ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.851
SRR3591706second leaf21.582
SRR3591707mature leaf25.224
SRR3591708Shoot apex26.279
SRR3591709Stem27.554
SRR3591710White floral bud36.287
SRR3591711White flower41.954
SRR3591712Green floral bud25.457
SRR3591713Yellow flower45.111
SRP173429 SRR8316895Juvenile bud stage 14.246
SRR8316896Juvenile bud stage 20.440
SRR8316897Juvenile bud stage 11.189
SRR8316894Third green stage 10.312
SRR8316900Third green stage 20.635
SRR8316901Third green stage 22.598
SRR8316898Complete white stage 11.803
SRR8316899Complete white stage 27.714
SRR8316903Complete white stage 24.249
SRR8316902Silver flowering stage18.535
SRR8316904Silver flowering stage30.061
SRR8316905Silver flowering stage13.408
SRR8316906Gold flowering stage 43.835
SRR8316907Gold flowering stage 38.723
SRR8316908Gold flowering stage 40.254
SRP132670SRR6706286Control16.861
SRR6706287Light intensity 50%16.537
SRR6706288Light intensity 20%19.066
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.023
CNS0095593Slightly white alabastrum(diploid) 212.893
CNS0095594Slightly white alabastrum(diploid) 314.086
CNS0095595Whole white alabastrum(diploid) 210.877
CNS0095596Whole white alabastrum(diploid) 38.955
CNS0095597Whole white alabastrum(diploid) 413.272
CNS0095598Silvery flower (diploied) 119.243
CNS0095599Silvery flower (diploied) 216.597
CNS0095600Silvery flower (diploied) 337.439
CNS0095601Golden flower (diploid) 118.331
CNS0095602Golden flower (diploid) 233.751
CNS0095603Golden flower (diploid) 332.854
CNS0095604Slightly white alabastrum(tetraploid) 116.346
CNS0095605Slightly white alabastrum(tetraploid) 210.978
CNS0095606Slightly white alabastrum(tetraploid) 327.980
CNS0095607Whole white alabastrum(tetraploid) 110.533
CNS0095608Whole white alabastrum(tetraploid) 210.545
CNS0095609Whole white alabastrum(tetraploid) 321.378
CNS0095610Silvery flower (tetraploid) 137.572
CNS0095611Silvery flower (tetraploid) 236.304
CNS0095612Silvery flower (tetraploid) 337.806
CNS0095613Golden flower (tetraploid) 123.971
CNS0095614Golden flower (tetraploid) 232.120
CNS0095615Golden flower (tetraploid) 349.785
CRA001975CRR073297Stem 116.250
CRR073298Stem 215.645
CRR073299Stem 314.177
CRR073300Leaf 121.009
CRR073301Leaf 217.082
CRR073302Leaf 314.362
CRR073303Juvenile bud 113.229
CRR073304Juvenile bud 212.663
CRR073305Juvenile bud 315.788
CRR073306Third green 111.608
CRR073307Third green 28.687
CRR073308Third green 311.117
CRR073309Second white 112.055
CRR073310Second white 218.837
CRR073311Second white 321.612
CRR073312Silver flowering 117.466
CRR073313Silver flowering 220.612
CRR073314Silver flowering 320.375
CRR073315Gold flowering 111.178
CRR073316Gold flowering 219.241
CRR073317Gold flowering 311.829
CRR073318Tawny withering 110.965
CRR073319Tawny withering 29.838
CRR073320Tawny withering 311.899