Gene detail

Detail information of GWHGAAZE014379

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010258290.1	2.3443E-140	PREDICTED: NAC domain-containing protein 100-like [Nelumbo nucifera]
Swissprot	tr\|Q9FLJ2\|NC100_ARATH	4E-117	NAC domain-containing protein 100
trEMBL	tr\|F6H5V0\|F6H5V0_VITVI	1E-138	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47571.1}
TAIR10	AT5G61430.1	1E-89	NAC domain containing protein 100

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11218642	11219929	+
GWHAAZE00000004	mRNA	11218642	11219929	+
GWHAAZE00000004	exon	11218642	11218855	+
GWHAAZE00000004	exon	11218935	11219212	+
GWHAAZE00000004	exon	11219348	11219929	+
GWHAAZE00000004	CDS	11218642	11218855	+
GWHAAZE00000004	CDS	11218935	11219212	+
GWHAAZE00000004	CDS	11219348	11219929	+

Transcript Sequence
>GWHTAAZE014393 TGTTTTCTTTTGCGAGTTTCAAAAAGAATGGAAGATGTTTCTGCTTTTTGTAGGGATGATGAACAAATTGAATTGCCTCCGGGCTTTCGATTTCACCCAACTGATGAAGAACTTATCACTCACTACTTATCCCCAAAGGTTCTTGATTCCGAATTCGACACTATAGCGATTGGTGAGGTTGATTTGAACAAGGTTGAGCCTTGGGACCTTCCATGGAGGGCAAAGATGGGTGAAAAAGAGTGGTATTTCTTCTATATGAGAGATAGGAAGTACCCAACTGGACTGAGGACAAACAGAGCTACTGATGCAGGGTATTGGAAAGCCACTGGCAAAGATAAAGAGATTTACACAGCCAAAACACTTGTTGGCATGAAGAAAACTTTGGTTTTCTACAAAGGGAGGGCACCAAAGGGTGAGAAAACCAACTGGGTCATGCATGAATTTAGACTAGACGGCAAGTGTTCGCTCAATTACCTTTCCAAATCATCAAAGAACGAGTGGGTGATCTGCAGAATCTTTCAGAAAAGCTCTGACGGAAAGAAAATACCAATTTCAGGATTGGAGAGGTTCACCAATAATTGTGAAAACAATATGACAAATTCAAATTTGCCACCATTACTTGATCTATCTCCTTTTGATCGTGCAATTGCCGGTACACCTCACGCGACCTGCTTCTCCGATCCAATGGAGGAAATGAAACCCCATAATCAAAGCCTTGATGAAAGCTTCAACAGTAGCACTCCTGTATTAACCTCACCTTCATCTTCTTTAAAGCCTTCTGACTTTCCCCCCTCTGTTTCTCTTTCAAACTCTTTTTACCCTTCCACTCAATTTCTACCCTGCAGTGGAAATTTCCAATACCCTGGTTCTGTTTGGATGCATGATCAATCTATATTGAGGCTTTTGCTCGAGAACAGTAATGGGCCAGATATGGAAAAGAATTCCAAGGGAAAATTATCGCAAGAAACTGGCTCGAGCACTGACCATGATTTGGGAGAGAGGTATTATGAAGATGAAGAGTATCCATATACTTCAAATGGAGCTGTGGATCTTGATTGTTTATGGAATTACTGA

Network for GWHGAAZE014379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	26	150	1.90E-38

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.450
	SRR3591706	second leaf	1.245
	SRR3591707	mature leaf	10.652
	SRR3591708	Shoot apex	0.786
	SRR3591709	Stem	5.165
	SRR3591710	White floral bud	15.457
	SRR3591711	White flower	51.046
	SRR3591712	Green floral bud	4.173
	SRR3591713	Yellow flower	85.147
SRP173429	SRR8316895	Juvenile bud stage	3.789
	SRR8316896	Juvenile bud stage	15.091
	SRR8316897	Juvenile bud stage	2.206
	SRR8316894	Third green stage	8.525
	SRR8316900	Third green stage	1.211
	SRR8316901	Third green stage	3.748
	SRR8316898	Complete white stage	2.649
	SRR8316899	Complete white stage	0.873
	SRR8316903	Complete white stage	3.814
	SRR8316902	Silver flowering stage	11.411
	SRR8316904	Silver flowering stage	18.469
	SRR8316905	Silver flowering stage	11.366
	SRR8316906	Gold flowering stage	33.079
	SRR8316907	Gold flowering stage	30.438
	SRR8316908	Gold flowering stage	35.212
SRP132670	SRR6706286	Control	4.104
	SRR6706287	Light intensity 50%	2.722
	SRR6706288	Light intensity 20%	0.607
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.763
	CNS0095593	Slightly white alabastrum(diploid) 2	1.046
	CNS0095594	Slightly white alabastrum(diploid) 3	8.090
	CNS0095595	Whole white alabastrum(diploid) 2	0.636
	CNS0095596	Whole white alabastrum(diploid) 3	1.036
	CNS0095597	Whole white alabastrum(diploid) 4	1.156
	CNS0095598	Silvery flower (diploied) 1	17.487
	CNS0095599	Silvery flower (diploied) 2	9.891
	CNS0095600	Silvery flower (diploied) 3	30.327
	CNS0095601	Golden flower (diploid) 1	22.947
	CNS0095602	Golden flower (diploid) 2	43.954
	CNS0095603	Golden flower (diploid) 3	43.124
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.053
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.709
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.006
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.572
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.715
	CNS0095610	Silvery flower (tetraploid) 1	56.981
	CNS0095611	Silvery flower (tetraploid) 2	42.111
	CNS0095612	Silvery flower (tetraploid) 3	23.453
	CNS0095613	Golden flower (tetraploid) 1	73.574
	CNS0095614	Golden flower (tetraploid) 2	65.440
	CNS0095615	Golden flower (tetraploid) 3	82.760
CRA001975	CRR073297	Stem 1	10.808
	CRR073298	Stem 2	25.508
	CRR073299	Stem 3	12.889
	CRR073300	Leaf 1	0.819
	CRR073301	Leaf 2	0.639
	CRR073302	Leaf 3	0.947
	CRR073303	Juvenile bud 1	0.132
	CRR073304	Juvenile bud 2	1.389
	CRR073305	Juvenile bud 3	0.256
	CRR073306	Third green 1	3.781
	CRR073307	Third green 2	3.295
	CRR073308	Third green 3	2.171
	CRR073309	Second white 1	12.141
	CRR073310	Second white 2	19.604
	CRR073311	Second white 3	29.871
	CRR073312	Silver flowering 1	31.005
	CRR073313	Silver flowering 2	21.411
	CRR073314	Silver flowering 3	25.762
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.234
	CRR073318	Tawny withering 1	7.366
	CRR073319	Tawny withering 2	4.728
	CRR073320	Tawny withering 3	6.010