Gene detail

Detail information of GWHGAAZE014366

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002278470.2	PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic isoform X2 [Vitis vinifera]
Swissprot	tr\|Q43847\|SSY2_SOLTU	Granule-bound starch synthase 2, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|F6H5U3\|F6H5U3_VITVI	Starch synthase, chloroplastic/amyloplastic {ECO:0000256\|RuleBase:RU361232}
TAIR10	AT3G01180.1	starch synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11038957	11044084	+
GWHAAZE00000004	mRNA	11038957	11044084	+
GWHAAZE00000004	exon	11038957	11039325	+
GWHAAZE00000004	exon	11040136	11040682	+
GWHAAZE00000004	exon	11040894	11040958	+
GWHAAZE00000004	exon	11041057	11041134	+
GWHAAZE00000004	exon	11041245	11041355	+
GWHAAZE00000004	exon	11041692	11041736	+
GWHAAZE00000004	exon	11042522	11042695	+
GWHAAZE00000004	exon	11042887	11044084	+
GWHAAZE00000004	CDS	11038957	11039325	+
GWHAAZE00000004	CDS	11040136	11040682	+
GWHAAZE00000004	CDS	11040894	11040958	+
GWHAAZE00000004	CDS	11041057	11041134	+
GWHAAZE00000004	CDS	11041245	11041355	+
GWHAAZE00000004	CDS	11041692	11041736	+
GWHAAZE00000004	CDS	11042522	11042695	+
GWHAAZE00000004	CDS	11042887	11043843	+
GWHAAZE00000004	three_prime_UTR	11043844	11044084	+

Transcript Sequence
>GWHTAAZE014380 ATGGCGTCCTTGGGATCTCTGCCATTTGTGATTGACACTGCGATTGAGAGTTCTCTTCTTCGTAACAGGAATTATCGTCGACCAAAGTTACCGCTACTTGCCCATCGGCCGAGAAAGTCTCTTGATACATGCGGTTTGAATGAATTGACATTTAAGTGCTCGAAAATTGGGAATGAAGATATTCTTGGGTGTTCTTTATGCTGTGATGGAGTAATGGGTGGTCGGACAAGGAGGATCAAGCGATTCAAAGCGAAGGGAAAGGGGTCTGAGGAAGTTGAGGATGGTGATGATGAATCGGAGGATGCTCTTCAGGCCACAATTGAGAAGAGCAAGAAGGTTTTAGCAATGCAAAGGGATCTACTTCAACAAATTTCAGAAAGAAGAAAACTAGTTTCATCCATTAAAAGCAGTATAATCAACCCAGAAGACAACGGAGCTTCTTTTGAAGAGAGGGAAAGCTCTTTTACAAGCTTGGATATTGCGTCAACTGATGGCAGTGATACTTATGAAGAATATAATCGTGATGTTTCACCTAGTAGTGTTGTTCAACCAACTACAGATGAGTTGATGGAAAAGCCTGGCTCAGCTATTAGTACGGATTTTGGTGAAGTCATAAATGAAACTAAAATGGGCTTACTTCTTAAAAATTCTTTGGAAGTAGATTCCCCCAAAAAGCAGGAATCTGGTTCAGGAAGTGTTTGGTCCAGTGAGTTACCTGCATTTCTTTCAGATTCAGCTGCAAAATCCAGTCTAAAATATGAAAAGCATGAAGATCTGAAAGAACCAAGTTTAGACGGCCCAAGTGGTAATGAAAATGTTCCTACAATTGAAGATGTGAAGCCACCTCCTTTAGCTGGGGCCAATGTAATGAATGTTATATTGGTTGCTGCAGAATGTGCTCCATGGTCTAAAACAGGTGGGCTTGGAGATGTTGCTGGAGCTTTGCCAAAGGCTTTGGCTAGGCGTGGACACAGGGTTATGGTTGTCGCACCTTACTACGGTAATTATGCTGAACCTAAACATACAGGACTTAGGAAACTGTATAAGGTAGATGGCCAGGATATGGAGGTCACCTACTTCCAAGCCTTTATTGATGGTGTCGATTTTGTCTTCATTGAAAGTCCTATGTTTCGGCATATTGAAAACAATATATATGGAGGAAACCGTATGGATATTTTAAAACGCATGGTTTTGTTCTGTAAAGCAGCTGTTGAGGTTCCTTGGCATGTCCCTTGTGGTGGGGTCTGCTATGGAGATGGAAATTTGGCTTTCATAGCAAATGATTGGCACACTGCCTTGTTGCCTGTGTATCTAAAGGCATATTATCGTGACAATGGATTGATGAAATATACAAGGTCCATCCTTGTGATTCATAACATTGCCCACCAGGGTCGGGGTCCGGTGAGTGATTTTTCCTACGTGGATCTTCCACCACACTACTTGGACCTTTTCAGAATGTATGATCCAGTAGGAGGTGAACACTTTAATATCTTTGCAGCTGGTTTAAAGACAGCAGATCGTGTCGTTACAGTAAGTCATGGATATGCATGGGAGCTAAAAACCACTGAAGGTGGTTGGGGTTTGCACGGAATTATTAACGAGAACGATTGGAAACTAAAGGGCATCGTCAACGGGATTGATACAAAAGACTGGAGCCCAGAGTCAGATATTCACCTTAAATCCGATGGTTACACTAACTACTCCCTGGAGACCCTTCAGACGGGCAAGCCACAGTGCAAGGCGGCATTACAGAGGGAGCTTGGTCTGCCCATTCGTGATGATATCCCGTTAATTGGGTTCATTGGACGGCTCGACCACCAAAAAGGGGTTGACCTCATTGCTGAGGCAGTTCCTTGGATGATGGGTCAAGATGTGCAGCTGATCATGTTGGGAACGGGAAGGCCCGACCTTGAGCAGATGCTCAGGCAATTTGAGACTCACTACAATGACAAAATTAGAGGATGGGTTGGTTTCTCCGTAAAATTGGCTCACCGGATAACCGCTGGTGCAGACATTTTACTGATGCCATCAAGATTTGAACCATGTGGGCTGAACCAGCTCTATGCTATGAACTACGGGACCATTCCAGTTGTACATGCGGTAGGTGGACTGAGAGATACAGTGCAGCCCTTTGATCCCTATAATGAGTCAGGGGTTGGGTGGACATTTGATAGAGCCGAGGCAAACCGGCTCATACATGCATTGGGAAACTGTTTGTTGACTTATAGGGAGTACAAACAGAGTTGGGAAGGGCTTCAGAGACGAGGGATGATGCAAGACCTCAGTTGGGACAATGCTGCTCACAATTATGAGGAAGTACTTGTCGCTGCCAAGTACCAGTGGTGAATTTTGGTTTATTAAATTGTGGGCCTGGCATGTTCTTTGTGCTGAGGGAAATAATTAGGGTTTTTAATCATGCTGAGGCAACTCTAGTGACCAGAGGGTTTTTGCAAGATAAGAAACTCTGCTCTGTAGCTGTTTGGTTGGTTTATATTGTCCAAGTTTTGCTTTTCAGCCTTGCACTTTTTCCAAGGATTCTAAGTAAGGTGCAGTCTTGTCAAGGTTCTTCTTTTCAACTACTTGTGAA

Network for GWHGAAZE014366

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08323.12	Glyco_transf_5	291	533	2.10E-63
PF00534.21	Glycos_transf_1	591	735	9.00E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00703	glgA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:0004373	molecular_function	glycogen (starch) synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.428
	SRR3591706	second leaf	72.646
	SRR3591707	mature leaf	102.185
	SRR3591708	Shoot apex	52.123
	SRR3591709	Stem	73.927
	SRR3591710	White floral bud	36.324
	SRR3591711	White flower	35.556
	SRR3591712	Green floral bud	27.447
	SRR3591713	Yellow flower	36.694
SRP173429	SRR8316895	Juvenile bud stage	28.638
	SRR8316896	Juvenile bud stage	30.627
	SRR8316897	Juvenile bud stage	14.975
	SRR8316894	Third green stage	10.267
	SRR8316900	Third green stage	23.783
	SRR8316901	Third green stage	23.121
	SRR8316898	Complete white stage	18.733
	SRR8316899	Complete white stage	36.806
	SRR8316903	Complete white stage	34.027
	SRR8316902	Silver flowering stage	21.154
	SRR8316904	Silver flowering stage	30.887
	SRR8316905	Silver flowering stage	15.968
	SRR8316906	Gold flowering stage	40.915
	SRR8316907	Gold flowering stage	48.448
	SRR8316908	Gold flowering stage	44.473
SRP132670	SRR6706286	Control	21.599
	SRR6706287	Light intensity 50%	21.661
	SRR6706288	Light intensity 20%	22.095
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.283
	CNS0095593	Slightly white alabastrum(diploid) 2	20.646
	CNS0095594	Slightly white alabastrum(diploid) 3	20.755
	CNS0095595	Whole white alabastrum(diploid) 2	17.751
	CNS0095596	Whole white alabastrum(diploid) 3	10.323
	CNS0095597	Whole white alabastrum(diploid) 4	14.530
	CNS0095598	Silvery flower (diploied) 1	43.339
	CNS0095599	Silvery flower (diploied) 2	59.966
	CNS0095600	Silvery flower (diploied) 3	45.325
	CNS0095601	Golden flower (diploid) 1	46.755
	CNS0095602	Golden flower (diploid) 2	51.215
	CNS0095603	Golden flower (diploid) 3	50.059
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.592
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.344
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.346
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.770
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.478
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.230
	CNS0095610	Silvery flower (tetraploid) 1	49.277
	CNS0095611	Silvery flower (tetraploid) 2	53.331
	CNS0095612	Silvery flower (tetraploid) 3	25.200
	CNS0095613	Golden flower (tetraploid) 1	23.527
	CNS0095614	Golden flower (tetraploid) 2	44.776
	CNS0095615	Golden flower (tetraploid) 3	32.037
CRA001975	CRR073297	Stem 1	29.098
	CRR073298	Stem 2	23.666
	CRR073299	Stem 3	21.578
	CRR073300	Leaf 1	19.951
	CRR073301	Leaf 2	18.461
	CRR073302	Leaf 3	13.884
	CRR073303	Juvenile bud 1	14.181
	CRR073304	Juvenile bud 2	16.071
	CRR073305	Juvenile bud 3	12.347
	CRR073306	Third green 1	21.666
	CRR073307	Third green 2	14.604
	CRR073308	Third green 3	17.726
	CRR073309	Second white 1	18.270
	CRR073310	Second white 2	16.149
	CRR073311	Second white 3	14.109
	CRR073312	Silver flowering 1	11.859
	CRR073313	Silver flowering 2	12.957
	CRR073314	Silver flowering 3	13.665
	CRR073315	Gold flowering 1	19.659
	CRR073316	Gold flowering 2	32.952
	CRR073317	Gold flowering 3	19.602
	CRR073318	Tawny withering 1	22.349
	CRR073319	Tawny withering 2	31.383
	CRR073320	Tawny withering 3	21.772