Detail information of GWHGAAZE014364


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011083402.10PREDICTED: uncharacterized protein LOC105165944 [Sesamum indicum]
trEMBLtr|F6HVW4|F6HVW4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58827.1}
TAIR10AT1G34220.23E-112Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1100447911007920+
GWHAAZE00000004mRNA1100447911007920+
GWHAAZE00000004exon1100447911004534+
GWHAAZE00000004exon1100478711004919+
GWHAAZE00000004exon1100504711005150+
GWHAAZE00000004exon1100632311006494+
GWHAAZE00000004exon1100674911006889+
GWHAAZE00000004exon1100696111007920+
GWHAAZE00000004CDS1100447911004534+
GWHAAZE00000004CDS1100478711004919+
GWHAAZE00000004CDS1100504711005150+
GWHAAZE00000004CDS1100632311006494+
GWHAAZE00000004CDS1100674911006889+
GWHAAZE00000004CDS1100696111007920+
Transcript Sequence

Network for GWHGAAZE014364

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03398.15Ist1201831.80E-58
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19476IST1 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf95.424
SRR3591706second leaf26.497
SRR3591707mature leaf24.805
SRR3591708Shoot apex30.282
SRR3591709Stem60.850
SRR3591710White floral bud96.187
SRR3591711White flower77.552
SRR3591712Green floral bud58.314
SRR3591713Yellow flower49.111
SRP173429 SRR8316895Juvenile bud stage 181.184
SRR8316896Juvenile bud stage 187.245
SRR8316897Juvenile bud stage 194.680
SRR8316894Third green stage 22.524
SRR8316900Third green stage 53.848
SRR8316901Third green stage 123.170
SRR8316898Complete white stage 37.373
SRR8316899Complete white stage 196.860
SRR8316903Complete white stage 63.301
SRR8316902Silver flowering stage40.785
SRR8316904Silver flowering stage41.766
SRR8316905Silver flowering stage19.105
SRR8316906Gold flowering stage 65.484
SRR8316907Gold flowering stage 59.271
SRR8316908Gold flowering stage 60.727
SRP132670SRR6706286Control39.307
SRR6706287Light intensity 50%47.471
SRR6706288Light intensity 20%51.547
CNP0000432CNS0095592Slightly white alabastrum(diploid) 178.906
CNS0095593Slightly white alabastrum(diploid) 2135.114
CNS0095594Slightly white alabastrum(diploid) 3128.082
CNS0095595Whole white alabastrum(diploid) 2147.399
CNS0095596Whole white alabastrum(diploid) 324.829
CNS0095597Whole white alabastrum(diploid) 478.100
CNS0095598Silvery flower (diploied) 1130.893
CNS0095599Silvery flower (diploied) 2241.432
CNS0095600Silvery flower (diploied) 3140.745
CNS0095601Golden flower (diploid) 1135.497
CNS0095602Golden flower (diploid) 2195.045
CNS0095603Golden flower (diploid) 3189.522
CNS0095604Slightly white alabastrum(tetraploid) 116.455
CNS0095605Slightly white alabastrum(tetraploid) 217.224
CNS0095606Slightly white alabastrum(tetraploid) 326.625
CNS0095607Whole white alabastrum(tetraploid) 115.672
CNS0095608Whole white alabastrum(tetraploid) 214.940
CNS0095609Whole white alabastrum(tetraploid) 322.936
CNS0095610Silvery flower (tetraploid) 143.591
CNS0095611Silvery flower (tetraploid) 243.604
CNS0095612Silvery flower (tetraploid) 377.142
CNS0095613Golden flower (tetraploid) 125.942
CNS0095614Golden flower (tetraploid) 235.063
CNS0095615Golden flower (tetraploid) 353.615
CRA001975CRR073297Stem 191.244
CRR073298Stem 279.607
CRR073299Stem 362.129
CRR073300Leaf 1125.011
CRR073301Leaf 2175.233
CRR073302Leaf 369.180
CRR073303Juvenile bud 183.529
CRR073304Juvenile bud 286.737
CRR073305Juvenile bud 3136.490
CRR073306Third green 1114.428
CRR073307Third green 2126.160
CRR073308Third green 3102.056
CRR073309Second white 180.055
CRR073310Second white 292.730
CRR073311Second white 378.669
CRR073312Silver flowering 1108.639
CRR073313Silver flowering 299.798
CRR073314Silver flowering 393.346
CRR073315Gold flowering 178.641
CRR073316Gold flowering 2177.354
CRR073317Gold flowering 395.337
CRR073318Tawny withering 177.863
CRR073319Tawny withering 2124.912
CRR073320Tawny withering 362.692