Detail information of GWHGAAZE014360


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009588763.19.3053E-166PREDICTED: phosphopantothenate--cysteine ligase 2-like [Nicotiana tomentosiformis]
Swissprottr|Q8GXR5|PPCS1_ARATH2E-136Phosphopantothenate--cysteine ligase 1
trEMBLtr|M1BF15|M1BF15_SOLTU6E-164Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400043667}
TAIR10AT1G12350.15E-1104-phospho-panto-thenoylcysteine synthetase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1092939210932907-
GWHAAZE00000004mRNA1092939210932907-
GWHAAZE00000004exon1092939210929649-
GWHAAZE00000004exon1092978310929902-
GWHAAZE00000004exon1093019110930292-
GWHAAZE00000004exon1093138010931439-
GWHAAZE00000004exon1093154010931673-
GWHAAZE00000004exon1093217610932261-
GWHAAZE00000004exon1093238810932432-
GWHAAZE00000004exon1093252510932629-
GWHAAZE00000004exon1093273810932907-
GWHAAZE00000004CDS1093273810932907-
GWHAAZE00000004CDS1093252510932629-
GWHAAZE00000004CDS1093238810932432-
GWHAAZE00000004CDS1093217610932261-
GWHAAZE00000004CDS1093154010931673-
GWHAAZE00000004CDS1093138010931439-
GWHAAZE00000004CDS1093019110930292-
GWHAAZE00000004CDS1092978310929902-
GWHAAZE00000004CDS1092939210929649-
Transcript Sequence

Network for GWHGAAZE014360

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04127.16DFP581050.00014
PF04127.16DFP2113085.60E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01922PPCS, COAB Metabolic pathways map01100
Pantothenate and CoA biosynthesismap00770

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.619
SRR3591706second leaf17.842
SRR3591707mature leaf13.814
SRR3591708Shoot apex44.076
SRR3591709Stem19.215
SRR3591710White floral bud66.240
SRR3591711White flower50.257
SRR3591712Green floral bud33.124
SRR3591713Yellow flower31.459
SRP173429 SRR8316895Juvenile bud stage 11.654
SRR8316896Juvenile bud stage 16.722
SRR8316897Juvenile bud stage 8.375
SRR8316894Third green stage 5.652
SRR8316900Third green stage 17.910
SRR8316901Third green stage 22.550
SRR8316898Complete white stage 7.176
SRR8316899Complete white stage 14.237
SRR8316903Complete white stage 11.863
SRR8316902Silver flowering stage30.084
SRR8316904Silver flowering stage31.727
SRR8316905Silver flowering stage19.989
SRR8316906Gold flowering stage 84.348
SRR8316907Gold flowering stage 101.584
SRR8316908Gold flowering stage 69.408
SRP132670SRR6706286Control11.050
SRR6706287Light intensity 50%12.152
SRR6706288Light intensity 20%12.285
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.041
CNS0095593Slightly white alabastrum(diploid) 211.204
CNS0095594Slightly white alabastrum(diploid) 314.600
CNS0095595Whole white alabastrum(diploid) 213.147
CNS0095596Whole white alabastrum(diploid) 316.482
CNS0095597Whole white alabastrum(diploid) 411.277
CNS0095598Silvery flower (diploied) 18.669
CNS0095599Silvery flower (diploied) 210.665
CNS0095600Silvery flower (diploied) 316.432
CNS0095601Golden flower (diploid) 18.031
CNS0095602Golden flower (diploid) 215.248
CNS0095603Golden flower (diploid) 313.490
CNS0095604Slightly white alabastrum(tetraploid) 118.853
CNS0095605Slightly white alabastrum(tetraploid) 215.930
CNS0095606Slightly white alabastrum(tetraploid) 316.697
CNS0095607Whole white alabastrum(tetraploid) 119.680
CNS0095608Whole white alabastrum(tetraploid) 221.957
CNS0095609Whole white alabastrum(tetraploid) 319.827
CNS0095610Silvery flower (tetraploid) 114.938
CNS0095611Silvery flower (tetraploid) 211.979
CNS0095612Silvery flower (tetraploid) 334.416
CNS0095613Golden flower (tetraploid) 111.037
CNS0095614Golden flower (tetraploid) 212.612
CNS0095615Golden flower (tetraploid) 38.913
CRA001975CRR073297Stem 111.727
CRR073298Stem 29.231
CRR073299Stem 37.312
CRR073300Leaf 16.680
CRR073301Leaf 25.970
CRR073302Leaf 37.407
CRR073303Juvenile bud 15.696
CRR073304Juvenile bud 29.763
CRR073305Juvenile bud 33.676
CRR073306Third green 119.024
CRR073307Third green 216.510
CRR073308Third green 319.951
CRR073309Second white 171.620
CRR073310Second white 269.949
CRR073311Second white 398.070
CRR073312Silver flowering 167.246
CRR073313Silver flowering 239.465
CRR073314Silver flowering 343.702
CRR073315Gold flowering 10.644
CRR073316Gold flowering 21.525
CRR073317Gold flowering 31.880
CRR073318Tawny withering 11.982
CRR073319Tawny withering 213.794
CRR073320Tawny withering 30.665