Detail information of GWHGAAZE014351


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285808.20PREDICTED: acetyl-CoA carboxylase 1-like [Vitis vinifera]
Swissprottr|Q38970|ACC1_ARATH0Biotin carboxylase
trEMBLtr|F6H0V3|F6H0V3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB45550.1}
TAIR10AT1G36160.20acetyl-CoA carboxylase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1079447610804445+
GWHAAZE00000004mRNA1079447610804445+
GWHAAZE00000004exon1079447610794832+
GWHAAZE00000004exon1079495510795161+
GWHAAZE00000004exon1079524610795407+
GWHAAZE00000004exon1079555510795647+
GWHAAZE00000004exon1079574910795844+
GWHAAZE00000004exon1079594610796119+
GWHAAZE00000004exon1079620210796295+
GWHAAZE00000004exon1079639910796586+
GWHAAZE00000004exon1079669110796741+
GWHAAZE00000004exon1079682810796867+
GWHAAZE00000004exon1079697310797097+
GWHAAZE00000004exon1079720110797317+
GWHAAZE00000004exon1079742210797496+
GWHAAZE00000004exon1079758410797640+
GWHAAZE00000004exon1079772010797810+
GWHAAZE00000004exon1079797110798026+
GWHAAZE00000004exon1079810710798298+
GWHAAZE00000004exon1079837110798559+
GWHAAZE00000004exon1079866810798778+
GWHAAZE00000004exon1079887110798957+
GWHAAZE00000004exon1079905110799227+
GWHAAZE00000004exon1079933710799414+
GWHAAZE00000004exon1079953310799655+
GWHAAZE00000004exon1079981410800083+
GWHAAZE00000004exon1080016410800507+
GWHAAZE00000004exon1080059310800830+
GWHAAZE00000004exon1080093610801288+
GWHAAZE00000004exon1080137710801590+
GWHAAZE00000004exon1080171710801893+
GWHAAZE00000004exon1080214110804291+
GWHAAZE00000004exon1080438610804445+
GWHAAZE00000004CDS1079447610794832+
GWHAAZE00000004CDS1079495510795161+
GWHAAZE00000004CDS1079524610795407+
GWHAAZE00000004CDS1079555510795647+
GWHAAZE00000004CDS1079574910795844+
GWHAAZE00000004CDS1079594610796119+
GWHAAZE00000004CDS1079620210796295+
GWHAAZE00000004CDS1079639910796586+
GWHAAZE00000004CDS1079669110796741+
GWHAAZE00000004CDS1079682810796867+
GWHAAZE00000004CDS1079697310797097+
GWHAAZE00000004CDS1079720110797317+
GWHAAZE00000004CDS1079742210797496+
GWHAAZE00000004CDS1079758410797640+
GWHAAZE00000004CDS1079772010797810+
GWHAAZE00000004CDS1079797110798026+
GWHAAZE00000004CDS1079810710798298+
GWHAAZE00000004CDS1079837110798559+
GWHAAZE00000004CDS1079866810798778+
GWHAAZE00000004CDS1079887110798957+
GWHAAZE00000004CDS1079905110799227+
GWHAAZE00000004CDS1079933710799414+
GWHAAZE00000004CDS1079953310799655+
GWHAAZE00000004CDS1079981410800083+
GWHAAZE00000004CDS1080016410800507+
GWHAAZE00000004CDS1080059310800830+
GWHAAZE00000004CDS1080093610801288+
GWHAAZE00000004CDS1080137710801590+
GWHAAZE00000004CDS1080171710801893+
GWHAAZE00000004CDS1080214110804291+
GWHAAZE00000004CDS1080438610804445+
Transcript Sequence

Network for GWHGAAZE014351

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00289.23Biotin_carb_N481613.60E-26
PF02786.18CPSase_L_D22083914.90E-46
PF02785.20Biotin_carb_C4385443.20E-22
PF00364.23Biotin_lipoyl6687334.00E-11
PF08326.13ACC_central73414789.70E-187
PF01039.23Carboxyl_trans157921297.20E-165
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11262ACACA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Fatty acid metabolismmap01212
Pyruvate metabolismmap00620
Propanoate metabolismmap00640
Fatty acid biosynthesismap00061
Aflatoxin biosynthesismap00254
AMPK signaling pathwaymap04152
Insulin signaling pathwaymap04910
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName
GO:0006633biological_processfatty acid biosynthetic process
GO:0005524molecular_functionATP binding
GO:0003989molecular_functionacetyl-CoA carboxylase activity
GO:0016874molecular_functionligase activity
GO:0046872molecular_functionmetal ion binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE014351.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100110120130140Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.417
SRR3591706second leaf46.647
SRR3591707mature leaf28.611
SRR3591708Shoot apex29.613
SRR3591709Stem34.598
SRR3591710White floral bud23.447
SRR3591711White flower82.034
SRR3591712Green floral bud39.803
SRR3591713Yellow flower130.913
SRP173429 SRR8316895Juvenile bud stage 27.457
SRR8316896Juvenile bud stage 39.768
SRR8316897Juvenile bud stage 16.606
SRR8316894Third green stage 23.504
SRR8316900Third green stage 66.982
SRR8316901Third green stage 62.381
SRR8316898Complete white stage 6.872
SRR8316899Complete white stage 46.642
SRR8316903Complete white stage 21.971
SRR8316902Silver flowering stage13.226
SRR8316904Silver flowering stage21.813
SRR8316905Silver flowering stage11.888
SRR8316906Gold flowering stage 55.673
SRR8316907Gold flowering stage 46.349
SRR8316908Gold flowering stage 65.830
SRP132670SRR6706286Control47.959
SRR6706287Light intensity 50%56.952
SRR6706288Light intensity 20%67.559
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.792
CNS0095593Slightly white alabastrum(diploid) 222.324
CNS0095594Slightly white alabastrum(diploid) 321.078
CNS0095595Whole white alabastrum(diploid) 222.710
CNS0095596Whole white alabastrum(diploid) 319.050
CNS0095597Whole white alabastrum(diploid) 421.659
CNS0095598Silvery flower (diploied) 117.086
CNS0095599Silvery flower (diploied) 215.838
CNS0095600Silvery flower (diploied) 346.155
CNS0095601Golden flower (diploid) 113.385
CNS0095602Golden flower (diploid) 241.429
CNS0095603Golden flower (diploid) 340.817
CNS0095604Slightly white alabastrum(tetraploid) 128.009
CNS0095605Slightly white alabastrum(tetraploid) 222.186
CNS0095606Slightly white alabastrum(tetraploid) 357.656
CNS0095607Whole white alabastrum(tetraploid) 118.508
CNS0095608Whole white alabastrum(tetraploid) 218.952
CNS0095609Whole white alabastrum(tetraploid) 350.887
CNS0095610Silvery flower (tetraploid) 149.438
CNS0095611Silvery flower (tetraploid) 250.011
CNS0095612Silvery flower (tetraploid) 330.431
CNS0095613Golden flower (tetraploid) 118.417
CNS0095614Golden flower (tetraploid) 229.667
CNS0095615Golden flower (tetraploid) 340.108
CRA001975CRR073297Stem 153.409
CRR073298Stem 251.356
CRR073299Stem 330.131
CRR073300Leaf 186.419
CRR073301Leaf 269.433
CRR073302Leaf 344.808
CRR073303Juvenile bud 140.253
CRR073304Juvenile bud 222.015
CRR073305Juvenile bud 357.138
CRR073306Third green 16.998
CRR073307Third green 23.899
CRR073308Third green 35.626
CRR073309Second white 17.330
CRR073310Second white 28.513
CRR073311Second white 39.603
CRR073312Silver flowering 112.836
CRR073313Silver flowering 212.659
CRR073314Silver flowering 317.031
CRR073315Gold flowering 119.052
CRR073316Gold flowering 224.210
CRR073317Gold flowering 313.694
CRR073318Tawny withering 114.797
CRR073319Tawny withering 210.705
CRR073320Tawny withering 314.274