Gene detail

Detail information of GWHGAAZE014332

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007159098.1	9.65942E-93	hypothetical protein PHAVU_002G208600g [Phaseolus vulgaris]
Swissprot	tr\|Q9FMG4\|SC35_ARATH	6E-64	Serine/arginine-rich splicing factor SC35
trEMBL	tr\|V7CLP4\|V7CLP4_PHAVU	4E-93	Uncharacterized protein {ECO:0000313\|EMBL:ESW31094.1}
TAIR10	AT5G64200.2	2E-52	ortholog of human splicing factor SC35

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	10356729	10358697	+
GWHAAZE00000004	mRNA	10356729	10358697	+
GWHAAZE00000004	exon	10356729	10356804	+
GWHAAZE00000004	exon	10356914	10356992	+
GWHAAZE00000004	exon	10357068	10357151	+
GWHAAZE00000004	exon	10357258	10357320	+
GWHAAZE00000004	exon	10357664	10357735	+
GWHAAZE00000004	exon	10358114	10358326	+
GWHAAZE00000004	exon	10358414	10358585	+
GWHAAZE00000004	exon	10358678	10358697	+
GWHAAZE00000004	CDS	10356729	10356804	+
GWHAAZE00000004	CDS	10356914	10356992	+
GWHAAZE00000004	CDS	10357068	10357151	+
GWHAAZE00000004	CDS	10357258	10357320	+
GWHAAZE00000004	CDS	10357664	10357735	+
GWHAAZE00000004	CDS	10358114	10358326	+
GWHAAZE00000004	CDS	10358414	10358585	+
GWHAAZE00000004	CDS	10358678	10358683	+
GWHAAZE00000004	three_prime_UTR	10358684	10358697	+

Transcript Sequence
>GWHTAAZE014346 ATGTCGCACTTTGGGAGAGCAGGTCCTCCGGACATCAGAGACACCTTCTCTCTTCTGGTCCTCAACATCACTTTCAGAACAAGTGCAGATGATTTGTTCCCTCTTTTCGACAAGTATGGCAAGGTCGTTGATGTCTTCATCCCCCGAGACCGAAGGACTGGAGATTCGCGGGGATTTGCATTTGTTCGTTACAAGTATGCAGACGAGGCCCAGAAGGCTGTTGAGAAGCTCGATGGCAAAGTTGTCGATGGCAGAGAGATTATGGTTCAATTCGCTAAGTATGGGCCTAATGCTGAACGAATTCACAAAGGGAGGATAGAAGAACCAGCTGAGAAGTCCAAAGGGAGGTCAAGGAGCCGCAGTCCTCGGCGAAGGAGTAGGGATGACTCCAGGGAAAAAGATTATAGGAGGAGAAGTCGCAGCAGAAGTCGGGGTAGATCTGACCGTGACCGGAACCGGGGTAAAGATAAAGATTATCGTCGTCGAAGTAGGAGCCTCAGTGAAAGCCCTGATTATCGCAAAGACCGTGGTAGAGGCAGATATGATGATGAGAAGCGTAGTCGTAGTCGTAGTCGCTCTTATGGAAGTGCCTCTCCTGCTCGGCGTAGCCTGAGCCCCAGGAGCCCATCTCCGCGCAGGTCGCCAAAAGGCCGAAGTCCGGCTGGACGAAATCAGAAAGAACGGTCCCCACCCCCAAGAAGTGTTTCACCTCAACATGCTGGGTCTCGATCTCCTTCTCCGCATAATTCGGATGTTGATGCTTAAGGGAGTGAACTGTG

Network for GWHGAAZE014332

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	19	87	8.90E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12891	SFRS2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	115.479
	SRR3591706	second leaf	76.486
	SRR3591707	mature leaf	58.592
	SRR3591708	Shoot apex	161.782
	SRR3591709	Stem	104.228
	SRR3591710	White floral bud	116.315
	SRR3591711	White flower	111.741
	SRR3591712	Green floral bud	103.532
	SRR3591713	Yellow flower	101.922
SRP173429	SRR8316895	Juvenile bud stage	118.477
	SRR8316896	Juvenile bud stage	131.743
	SRR8316897	Juvenile bud stage	68.445
	SRR8316894	Third green stage	54.917
	SRR8316900	Third green stage	160.873
	SRR8316901	Third green stage	156.948
	SRR8316898	Complete white stage	57.239
	SRR8316899	Complete white stage	218.367
	SRR8316903	Complete white stage	91.590
	SRR8316902	Silver flowering stage	49.565
	SRR8316904	Silver flowering stage	52.090
	SRR8316905	Silver flowering stage	31.657
	SRR8316906	Gold flowering stage	105.477
	SRR8316907	Gold flowering stage	101.544
	SRR8316908	Gold flowering stage	106.617
SRP132670	SRR6706286	Control	145.970
	SRR6706287	Light intensity 50%	143.738
	SRR6706288	Light intensity 20%	154.581
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	117.220
	CNS0095593	Slightly white alabastrum(diploid) 2	128.106
	CNS0095594	Slightly white alabastrum(diploid) 3	107.711
	CNS0095595	Whole white alabastrum(diploid) 2	85.155
	CNS0095596	Whole white alabastrum(diploid) 3	84.773
	CNS0095597	Whole white alabastrum(diploid) 4	75.828
	CNS0095598	Silvery flower (diploied) 1	131.092
	CNS0095599	Silvery flower (diploied) 2	108.358
	CNS0095600	Silvery flower (diploied) 3	96.794
	CNS0095601	Golden flower (diploid) 1	98.502
	CNS0095602	Golden flower (diploid) 2	95.479
	CNS0095603	Golden flower (diploid) 3	100.208
	CNS0095604	Slightly white alabastrum(tetraploid) 1	120.095
	CNS0095605	Slightly white alabastrum(tetraploid) 2	109.691
	CNS0095606	Slightly white alabastrum(tetraploid) 3	220.012
	CNS0095607	Whole white alabastrum(tetraploid) 1	62.528
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.449
	CNS0095609	Whole white alabastrum(tetraploid) 3	124.972
	CNS0095610	Silvery flower (tetraploid) 1	123.409
	CNS0095611	Silvery flower (tetraploid) 2	101.904
	CNS0095612	Silvery flower (tetraploid) 3	99.072
	CNS0095613	Golden flower (tetraploid) 1	82.541
	CNS0095614	Golden flower (tetraploid) 2	111.503
	CNS0095615	Golden flower (tetraploid) 3	83.541
CRA001975	CRR073297	Stem 1	167.940
	CRR073298	Stem 2	175.194
	CRR073299	Stem 3	182.341
	CRR073300	Leaf 1	168.146
	CRR073301	Leaf 2	171.374
	CRR073302	Leaf 3	160.338
	CRR073303	Juvenile bud 1	171.239
	CRR073304	Juvenile bud 2	106.282
	CRR073305	Juvenile bud 3	172.422
	CRR073306	Third green 1	41.138
	CRR073307	Third green 2	50.369
	CRR073308	Third green 3	53.920
	CRR073309	Second white 1	42.389
	CRR073310	Second white 2	36.152
	CRR073311	Second white 3	28.319
	CRR073312	Silver flowering 1	26.377
	CRR073313	Silver flowering 2	44.550
	CRR073314	Silver flowering 3	31.705
	CRR073315	Gold flowering 1	89.289
	CRR073316	Gold flowering 2	93.807
	CRR073317	Gold flowering 3	78.204
	CRR073318	Tawny withering 1	134.834
	CRR073319	Tawny withering 2	121.940
	CRR073320	Tawny withering 3	142.767