Gene detail

Detail information of GWHGAAZE014330

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664322.1	0	PREDICTED: carbon catabolite repressor protein 4 homolog 1-like isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8W0Z9\|CCR4A_ARATH	3E-123	Carbon catabolite repressor protein 4 homolog 1
trEMBL	tr\|A0A061FF92\|A0A061FF92_THECC	2E-180	DNAse I-like superfamily protein, putative isoform 3 {ECO:0000313\|EMBL:EOY16010.1}
TAIR10	AT3G58560.1	2E-104	DNAse I-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	10304609	10308667	+
GWHAAZE00000004	mRNA	10304609	10308667	+
GWHAAZE00000004	exon	10304609	10305082	+
GWHAAZE00000004	exon	10305245	10305331	+
GWHAAZE00000004	exon	10305491	10305574	+
GWHAAZE00000004	exon	10305653	10305736	+
GWHAAZE00000004	exon	10305839	10305919	+
GWHAAZE00000004	exon	10306014	10306067	+
GWHAAZE00000004	exon	10306153	10306241	+
GWHAAZE00000004	exon	10307242	10307350	+
GWHAAZE00000004	exon	10307460	10307601	+
GWHAAZE00000004	exon	10308435	10308667	+
GWHAAZE00000004	CDS	10304609	10305082	+
GWHAAZE00000004	CDS	10305245	10305331	+
GWHAAZE00000004	CDS	10305491	10305574	+
GWHAAZE00000004	CDS	10305653	10305736	+
GWHAAZE00000004	CDS	10305839	10305919	+
GWHAAZE00000004	CDS	10306014	10306067	+
GWHAAZE00000004	CDS	10306153	10306241	+
GWHAAZE00000004	CDS	10307242	10307350	+
GWHAAZE00000004	CDS	10307460	10307601	+
GWHAAZE00000004	CDS	10308435	10308667	+

Transcript Sequence
>GWHTAAZE014344 TACTGCGAACATAGTACTTCTTCTGAACACCACACCGACCAGGGTTTGTTAGTTGTTGAACGAGAAGGAAAAGCATGGGTCAAGTTAGGCTCTTCAAGAACTTATGTGCCATCTTTGAGGGACTTTGGCTTCAGTTTGAGGCTCGAATCTGTTGCCACAGATGGTTTGATGGGAATGCATTTGTCTCCAGTGAATGTTACAGTGACTGATCCAGTAATTACTTCTCCTGCCCCTTGCCCTCGTTCTATGATTTCAGTTGGAGCCCCGTTGAATTGTACGAATTTGAGTTTTGAAGCACAGTCTTGTAATGGTGGAACTTTTACTGTGCTATCTTATAATGTCCTTTCTGATATATATGCTAGTAGGGATATGTACAGTTACTGCCCTGATTGGGCTCTCACATGGGAATACCGCAGGCAAAATTTGCTTAAAGAGATTGTTGGGTATAATGCAGATATCCTTTGTCTTCAGGAAGTACAGAGTGATCATTTTGAAAACTTTTTCAGTCCCGAGCTGGAAAAACGTGGTTACTCGGTTATATATAAGAAAAAAACAAAAGAGGTGTATACATCTAATCAATATACAATCGATGGATGTGCAACATTCTTCCGCCATGATCAGTTCAAAGAAATAATAAAATATGAGCTTGAGTTTGATAAATCGGCATTGATGGTGGTTGAAGCACTAAAACCATATAAAAGAAGTGAAGGTTGCTTTCGCTTGATGAAGGGCAACATTGCACTGGTTGGAATACTAGAGGCGGTGGAAAATAACAGTATTTATGATGGCACTAAATTTAGAATCTGTGTGGCAAACACTCATATACATGCCAATTCGAGCTTTCCGGATGCAAAATTGTTTCAGGTGGTCAGTTTGATCATGGGACTAGAGAAATTAGCCTATTCACAAATTCCTATTCTGATTTGTGGGGATATGAACTCTCTTCCTGGAAGTGATCCTCATAGATTTGTACTTGATGGTAAAGTTAAACCTGTGCTTACAAAGTCCATGGATCCATTTAGGATACATAAGCGCCTCAAGCTTTGCCACTCGATGCATCTGGCAAGTGCATATTCTTCATTACTTCAGTCGAGGAGGATTGAGGAACGGCAAAAGGAAAAGATGGACCCTGCAACCAAGGAGCCTCGATTCACCAACTCCAAACAGGGATTCCAACAAACAATTGATTATATTTTCTACACAGAGGATAGGTTGAAGGTGGATGATCTTCTGGAGCTTCTCGATCAAAAAAGTTTGGGGGGTGTGGCTCTTCCATCACCTTTATGGTCATCTGACCACGTTGCTCTCATGGCTACTTTCAGGTTCAAACCAGATTTCTTTAAACAAGACTACTCATCAGCCCCTCTGAACCCATGGCAAGATGGAGAACCCATCTTCCAAACACTAGTGGATGAAGAAATTGATGATTCTGAGTAA

Network for GWHGAAZE014330

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03372.24	Exo_endo_phos	110	433	8.00E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12603	CNOT6, CCR4	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.073
	SRR3591706	second leaf	15.850
	SRR3591707	mature leaf	13.558
	SRR3591708	Shoot apex	26.163
	SRR3591709	Stem	29.469
	SRR3591710	White floral bud	11.703
	SRR3591711	White flower	13.601
	SRR3591712	Green floral bud	18.427
	SRR3591713	Yellow flower	9.876
SRP173429	SRR8316895	Juvenile bud stage	11.693
	SRR8316896	Juvenile bud stage	17.372
	SRR8316897	Juvenile bud stage	8.347
	SRR8316894	Third green stage	6.904
	SRR8316900	Third green stage	19.918
	SRR8316901	Third green stage	19.194
	SRR8316898	Complete white stage	8.040
	SRR8316899	Complete white stage	28.258
	SRR8316903	Complete white stage	11.120
	SRR8316902	Silver flowering stage	6.994
	SRR8316904	Silver flowering stage	9.569
	SRR8316905	Silver flowering stage	4.051
	SRR8316906	Gold flowering stage	14.293
	SRR8316907	Gold flowering stage	16.094
	SRR8316908	Gold flowering stage	15.321
SRP132670	SRR6706286	Control	10.825
	SRR6706287	Light intensity 50%	13.734
	SRR6706288	Light intensity 20%	15.002
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.653
	CNS0095593	Slightly white alabastrum(diploid) 2	20.178
	CNS0095594	Slightly white alabastrum(diploid) 3	16.580
	CNS0095595	Whole white alabastrum(diploid) 2	16.995
	CNS0095596	Whole white alabastrum(diploid) 3	15.998
	CNS0095597	Whole white alabastrum(diploid) 4	19.057
	CNS0095598	Silvery flower (diploied) 1	15.376
	CNS0095599	Silvery flower (diploied) 2	17.611
	CNS0095600	Silvery flower (diploied) 3	12.079
	CNS0095601	Golden flower (diploid) 1	20.392
	CNS0095602	Golden flower (diploid) 2	12.955
	CNS0095603	Golden flower (diploid) 3	11.654
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.272
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.439
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.735
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.222
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.942
	CNS0095610	Silvery flower (tetraploid) 1	15.176
	CNS0095611	Silvery flower (tetraploid) 2	14.403
	CNS0095612	Silvery flower (tetraploid) 3	12.707
	CNS0095613	Golden flower (tetraploid) 1	10.567
	CNS0095614	Golden flower (tetraploid) 2	16.405
	CNS0095615	Golden flower (tetraploid) 3	6.297
CRA001975	CRR073297	Stem 1	12.687
	CRR073298	Stem 2	12.027
	CRR073299	Stem 3	7.529
	CRR073300	Leaf 1	17.010
	CRR073301	Leaf 2	16.110
	CRR073302	Leaf 3	7.742
	CRR073303	Juvenile bud 1	11.350
	CRR073304	Juvenile bud 2	5.575
	CRR073305	Juvenile bud 3	8.207
	CRR073306	Third green 1	2.325
	CRR073307	Third green 2	2.024
	CRR073308	Third green 3	1.966
	CRR073309	Second white 1	3.041
	CRR073310	Second white 2	2.288
	CRR073311	Second white 3	2.864
	CRR073312	Silver flowering 1	1.598
	CRR073313	Silver flowering 2	0.503
	CRR073314	Silver flowering 3	0.688
	CRR073315	Gold flowering 1	4.917
	CRR073316	Gold flowering 2	6.059
	CRR073317	Gold flowering 3	2.758
	CRR073318	Tawny withering 1	8.753
	CRR073319	Tawny withering 2	11.367
	CRR073320	Tawny withering 3	9.710