Gene detail

Detail information of GWHGAAZE014303

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004237936.1	0	PREDICTED: serine/threonine-protein kinase SAPK2 [Solanum lycopersicum]
Swissprot	tr\|A2YNT8\|SAPK2_ORYSI	0	Serine/threonine-protein kinase SAPK2
trEMBL	tr\|K4BTY8\|K4BTY8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g074500.2.1}
TAIR10	AT1G78290.3	1E-134	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	9772352	9775090	+
GWHAAZE00000004	mRNA	9772352	9775090	+
GWHAAZE00000004	exon	9772352	9772471	+
GWHAAZE00000004	exon	9772561	9772635	+
GWHAAZE00000004	exon	9773361	9773462	+
GWHAAZE00000004	exon	9773573	9773626	+
GWHAAZE00000004	exon	9773699	9773791	+
GWHAAZE00000004	exon	9773891	9773983	+
GWHAAZE00000004	exon	9774065	9774169	+
GWHAAZE00000004	exon	9774289	9774387	+
GWHAAZE00000004	exon	9774818	9775090	+
GWHAAZE00000004	CDS	9772352	9772471	+
GWHAAZE00000004	CDS	9772561	9772635	+
GWHAAZE00000004	CDS	9773361	9773462	+
GWHAAZE00000004	CDS	9773573	9773626	+
GWHAAZE00000004	CDS	9773699	9773791	+
GWHAAZE00000004	CDS	9773891	9773983	+
GWHAAZE00000004	CDS	9774065	9774169	+
GWHAAZE00000004	CDS	9774289	9774387	+
GWHAAZE00000004	CDS	9774818	9775090	+

Transcript Sequence
>GWHTAAZE014317 ATGGAGAGGTATGAGATAGGGAAAGAAATTGGATCTGGGAATTTTGGGGTAGCTAAACTTGTTAGAGATAAGTGTACAAGAGAGCTCTTTGCTGTCAAATTCATTGAGAGAGGCCAAAAGATAGATGAGCATGTACAAAGGGAAATTGTGAACCACAGCTCATTGAAGCATCCCAACATAGTTAGATTCAAAGAGGTCTTGCTAACGCCTACTCATCTAGCAATAGTGATGGAGTATGCTGCTGGTGGAGAACTCTATGAGAGGATATGCAGTACTGGCAGATTCAGTGAGAATGAGGCTAGGTTTTTCTTTCAACAGCTTATATCAGGAGTTAGCTATTGTCATTCAATGGAAATTTGTCACAGAGATCTTAAGTTGGAAAATACACTCTTAGATGGAAGCACGGCACCGCGTGTTAAGATATGTGATTTTGGGTACTCCAAGTCATCCATTTTCCATTCTCAACCGAAGTCAAAAGTAGGAACGCCAGCCTATGTTGCACCCGAGGTCCTCTCTAGAAAACAATATGATGGAAAGCTTGCAGATGTTTGGTCTTGTGGGGTAACTTTGTACGTGATGCTGGTCGGGGCTTACCCCTTTGAAGATCCCCATGATCCGAGAAACATGAGAAAGACAATTTCTCGGATACTTGGCGCCCAGTATTTGGTTCCGGATCATGTATTAGTTTCAGTGGAATGTAGACATCTTTTGTCTAGGATATTTGTAGCAGGTCCTGAAATGAGAATAACAATCCCGGAAATTAAAAGGCACCCATGGTTCCTGCATAACTTGCCTATAGAATTGATGGAAGGAGGAAGCCTTCAGAGAAGTGATGTTAACAACCCATCTCAAAGCATTCAAGAAATATTGTCGATAATACAAGAGGCGAGGATACCATCCCATGTGAATAAGGATGGTTCACACACTGTTGGTGGCAGTATGGATTTAGATTATATGGATGATGGAGAGATTTCAGATGTAGAAACAAGTGGTGATTTTGTGTGCCCATTGTGA

Network for GWHGAAZE014303

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	4	260	2.50E-69

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_OST1L

KEGG pathway

KO	Enzyme	pathway	mapID
K14498	SNRK2	MAPK signaling pathway - plant	map04016
K14498	SNRK2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.998
	SRR3591706	second leaf	19.974
	SRR3591707	mature leaf	17.262
	SRR3591708	Shoot apex	14.846
	SRR3591709	Stem	17.981
	SRR3591710	White floral bud	20.200
	SRR3591711	White flower	25.107
	SRR3591712	Green floral bud	25.084
	SRR3591713	Yellow flower	25.673
SRP173429	SRR8316895	Juvenile bud stage	9.483
	SRR8316896	Juvenile bud stage	13.571
	SRR8316897	Juvenile bud stage	5.225
	SRR8316894	Third green stage	9.035
	SRR8316900	Third green stage	23.664
	SRR8316901	Third green stage	19.846
	SRR8316898	Complete white stage	13.134
	SRR8316899	Complete white stage	36.313
	SRR8316903	Complete white stage	18.209
	SRR8316902	Silver flowering stage	17.344
	SRR8316904	Silver flowering stage	25.687
	SRR8316905	Silver flowering stage	11.121
	SRR8316906	Gold flowering stage	50.564
	SRR8316907	Gold flowering stage	40.760
	SRR8316908	Gold flowering stage	46.500
SRP132670	SRR6706286	Control	15.055
	SRR6706287	Light intensity 50%	17.335
	SRR6706288	Light intensity 20%	16.351
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.784
	CNS0095593	Slightly white alabastrum(diploid) 2	16.330
	CNS0095594	Slightly white alabastrum(diploid) 3	9.677
	CNS0095595	Whole white alabastrum(diploid) 2	14.352
	CNS0095596	Whole white alabastrum(diploid) 3	13.902
	CNS0095597	Whole white alabastrum(diploid) 4	14.738
	CNS0095598	Silvery flower (diploied) 1	16.487
	CNS0095599	Silvery flower (diploied) 2	10.531
	CNS0095600	Silvery flower (diploied) 3	20.155
	CNS0095601	Golden flower (diploid) 1	16.896
	CNS0095602	Golden flower (diploid) 2	17.196
	CNS0095603	Golden flower (diploid) 3	17.849
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.998
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.130
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.326
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.900
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.317
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.277
	CNS0095610	Silvery flower (tetraploid) 1	26.190
	CNS0095611	Silvery flower (tetraploid) 2	21.236
	CNS0095612	Silvery flower (tetraploid) 3	22.815
	CNS0095613	Golden flower (tetraploid) 1	16.695
	CNS0095614	Golden flower (tetraploid) 2	18.214
	CNS0095615	Golden flower (tetraploid) 3	15.987
CRA001975	CRR073297	Stem 1	14.711
	CRR073298	Stem 2	13.295
	CRR073299	Stem 3	8.792
	CRR073300	Leaf 1	17.945
	CRR073301	Leaf 2	15.459
	CRR073302	Leaf 3	14.043
	CRR073303	Juvenile bud 1	10.836
	CRR073304	Juvenile bud 2	12.829
	CRR073305	Juvenile bud 3	17.262
	CRR073306	Third green 1	7.894
	CRR073307	Third green 2	5.896
	CRR073308	Third green 3	5.985
	CRR073309	Second white 1	14.337
	CRR073310	Second white 2	14.432
	CRR073311	Second white 3	17.609
	CRR073312	Silver flowering 1	8.943
	CRR073313	Silver flowering 2	7.314
	CRR073314	Silver flowering 3	3.662
	CRR073315	Gold flowering 1	8.899
	CRR073316	Gold flowering 2	14.009
	CRR073317	Gold flowering 3	5.655
	CRR073318	Tawny withering 1	14.123
	CRR073319	Tawny withering 2	11.308
	CRR073320	Tawny withering 3	12.956