Detail information of GWHGAAZE014298


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002531115.11.02335E-40seryl-tRNA synthetase, putative [Ricinus communis]
Swissprottr|Q39230|SYS_ARATH9E-16Serine--tRNA ligase
trEMBLtr|B9SYP6|B9SYP6_RICCO4E-41Seryl-tRNA synthetase, putative {ECO:0000313|EMBL:EEF31280.1}
TAIR10AT1G11870.27E-34Seryl-tRNA synthetase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene97164599716864-
GWHAAZE00000004mRNA97164599716864-
GWHAAZE00000004exon97164599716731-
GWHAAZE00000004exon97168329716864-
GWHAAZE00000004CDS97168329716864-
GWHAAZE00000004CDS97164599716731-
Transcript Sequence

Network for GWHGAAZE014298

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01875SARS, serS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.731
SRR3591706second leaf0.771
SRR3591707mature leaf0.871
SRR3591708Shoot apex0.296
SRR3591709Stem2.851
SRR3591710White floral bud1.700
SRR3591711White flower0.000
SRR3591712Green floral bud0.541
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.050
SRR8316896Juvenile bud stage 0.150
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.244
SRR8316900Third green stage 0.284
SRR8316901Third green stage 0.571
SRR8316898Complete white stage 1.369
SRR8316899Complete white stage 5.247
SRR8316903Complete white stage 2.522
SRR8316902Silver flowering stage0.080
SRR8316904Silver flowering stage0.169
SRR8316905Silver flowering stage0.170
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.260
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.227
SRR6706287Light intensity 50%0.896
SRR6706288Light intensity 20%0.592
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.279
CNS0095593Slightly white alabastrum(diploid) 20.754
CNS0095594Slightly white alabastrum(diploid) 30.837
CNS0095595Whole white alabastrum(diploid) 20.308
CNS0095596Whole white alabastrum(diploid) 30.137
CNS0095597Whole white alabastrum(diploid) 41.149
CNS0095598Silvery flower (diploied) 11.045
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.196
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.173
CNS0095605Slightly white alabastrum(tetraploid) 20.212
CNS0095606Slightly white alabastrum(tetraploid) 31.780
CNS0095607Whole white alabastrum(tetraploid) 11.114
CNS0095608Whole white alabastrum(tetraploid) 21.147
CNS0095609Whole white alabastrum(tetraploid) 30.579
CNS0095610Silvery flower (tetraploid) 10.417
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.192
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.142
CRA001975CRR073297Stem 10.034
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.244
CRR073301Leaf 20.000
CRR073302Leaf 30.134
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 32.199
CRR073306Third green 10.001
CRR073307Third green 20.152
CRR073308Third green 30.158
CRR073309Second white 10.002
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.307
CRR073316Gold flowering 20.675
CRR073317Gold flowering 30.357
CRR073318Tawny withering 10.062
CRR073319Tawny withering 26.420
CRR073320Tawny withering 31.765