Detail information of GWHGAAZE014293


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008342522.10PREDICTED: isoamylase 3, chloroplastic-like [Malus domestica]
Swissprottr|Q9M0S5|ISOA3_ARATH0Isoamylase 3, chloroplastic (Precursor)
trEMBLtr|A0A067LA91|A0A067LA91_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP41425.1}
TAIR10AT4G09020.10isoamylase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene96135149640870-
GWHAAZE00000004mRNA96135149640870-
GWHAAZE00000004exon96407649640870-
GWHAAZE00000004exon96403619640451-
GWHAAZE00000004exon96401949640268-
GWHAAZE00000004exon96391439639300-
GWHAAZE00000004exon96386929638875-
GWHAAZE00000004exon96381189638354-
GWHAAZE00000004exon96376589637762-
GWHAAZE00000004exon96306349630738-
GWHAAZE00000004exon96301089630242-
GWHAAZE00000004exon96296229629708-
GWHAAZE00000004exon96270249627081-
GWHAAZE00000004exon96254479625510-
GWHAAZE00000004exon96246879624786-
GWHAAZE00000004exon96241729624272-
GWHAAZE00000004exon96181429618193-
GWHAAZE00000004exon96169299616991-
GWHAAZE00000004exon96164689616557-
GWHAAZE00000004exon96162909616362-
GWHAAZE00000004exon96159599616038-
GWHAAZE00000004exon96156419615777-
GWHAAZE00000004exon96139209614028-
GWHAAZE00000004exon96135149613627-
GWHAAZE00000004CDS96407649640870-
GWHAAZE00000004CDS96403619640451-
GWHAAZE00000004CDS96401949640268-
GWHAAZE00000004CDS96391439639300-
GWHAAZE00000004CDS96386929638875-
GWHAAZE00000004CDS96381189638354-
GWHAAZE00000004CDS96376589637762-
GWHAAZE00000004CDS96306349630738-
GWHAAZE00000004CDS96301089630242-
GWHAAZE00000004CDS96296229629708-
GWHAAZE00000004CDS96270249627081-
GWHAAZE00000004CDS96254479625510-
GWHAAZE00000004CDS96246879624786-
GWHAAZE00000004CDS96241729624272-
GWHAAZE00000004CDS96181429618193-
GWHAAZE00000004CDS96169299616991-
GWHAAZE00000004CDS96164689616557-
GWHAAZE00000004CDS96162909616362-
GWHAAZE00000004CDS96159599616038-
GWHAAZE00000004CDS96156419615777-
GWHAAZE00000004CDS96139209614028-
GWHAAZE00000004CDS96135149613627-
Transcript Sequence

Network for GWHGAAZE014293

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02922.19CBM_481862415.90E-06
PF00128.25Alpha-amylase3126695.80E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01214ISA, treX Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.320
SRR3591706second leaf44.322
SRR3591707mature leaf50.864
SRR3591708Shoot apex16.171
SRR3591709Stem21.861
SRR3591710White floral bud30.175
SRR3591711White flower19.189
SRR3591712Green floral bud58.806
SRR3591713Yellow flower6.241
SRP173429 SRR8316895Juvenile bud stage 37.111
SRR8316896Juvenile bud stage 43.206
SRR8316897Juvenile bud stage 32.580
SRR8316894Third green stage 26.508
SRR8316900Third green stage 93.251
SRR8316901Third green stage 72.630
SRR8316898Complete white stage 19.981
SRR8316899Complete white stage 89.519
SRR8316903Complete white stage 29.141
SRR8316902Silver flowering stage9.585
SRR8316904Silver flowering stage10.881
SRR8316905Silver flowering stage3.543
SRR8316906Gold flowering stage 11.025
SRR8316907Gold flowering stage 12.439
SRR8316908Gold flowering stage 13.105
SRP132670SRR6706286Control79.316
SRR6706287Light intensity 50%95.514
SRR6706288Light intensity 20%106.708
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.743
CNS0095593Slightly white alabastrum(diploid) 223.356
CNS0095594Slightly white alabastrum(diploid) 317.113
CNS0095595Whole white alabastrum(diploid) 222.484
CNS0095596Whole white alabastrum(diploid) 327.566
CNS0095597Whole white alabastrum(diploid) 419.533
CNS0095598Silvery flower (diploied) 110.814
CNS0095599Silvery flower (diploied) 214.477
CNS0095600Silvery flower (diploied) 313.654
CNS0095601Golden flower (diploid) 19.167
CNS0095602Golden flower (diploid) 29.997
CNS0095603Golden flower (diploid) 39.827
CNS0095604Slightly white alabastrum(tetraploid) 137.254
CNS0095605Slightly white alabastrum(tetraploid) 232.609
CNS0095606Slightly white alabastrum(tetraploid) 370.113
CNS0095607Whole white alabastrum(tetraploid) 122.656
CNS0095608Whole white alabastrum(tetraploid) 222.059
CNS0095609Whole white alabastrum(tetraploid) 378.579
CNS0095610Silvery flower (tetraploid) 112.858
CNS0095611Silvery flower (tetraploid) 216.400
CNS0095612Silvery flower (tetraploid) 315.848
CNS0095613Golden flower (tetraploid) 13.139
CNS0095614Golden flower (tetraploid) 26.204
CNS0095615Golden flower (tetraploid) 32.618
CRA001975CRR073297Stem 173.185
CRR073298Stem 265.613
CRR073299Stem 357.663
CRR073300Leaf 199.717
CRR073301Leaf 282.739
CRR073302Leaf 398.415
CRR073303Juvenile bud 197.790
CRR073304Juvenile bud 253.782
CRR073305Juvenile bud 395.134
CRR073306Third green 113.100
CRR073307Third green 24.845
CRR073308Third green 39.669
CRR073309Second white 13.902
CRR073310Second white 25.430
CRR073311Second white 33.695
CRR073312Silver flowering 11.320
CRR073313Silver flowering 21.460
CRR073314Silver flowering 31.433
CRR073315Gold flowering 122.247
CRR073316Gold flowering 243.941
CRR073317Gold flowering 326.682
CRR073318Tawny withering 110.276
CRR073319Tawny withering 211.495
CRR073320Tawny withering 314.386