Gene detail

Detail information of GWHGAAZE014286

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01118.1	3.0309E-117	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9C7T4\|BH096_ARATH	1E-88	Transcription factor bHLH96
trEMBL	tr\|A0A068U0I7\|A0A068U0I7_COFCA	1E-117	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP01118.1}
TAIR10	AT1G72210.1	2E-66	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	9483078	9484740	+
GWHAAZE00000004	mRNA	9483078	9484740	+
GWHAAZE00000004	exon	9483078	9483530	+
GWHAAZE00000004	exon	9484049	9484480	+
GWHAAZE00000004	exon	9484645	9484740	+
GWHAAZE00000004	five_prime_UTR	9483078	9483083	+
GWHAAZE00000004	CDS	9483084	9483530	+
GWHAAZE00000004	CDS	9484049	9484480	+
GWHAAZE00000004	CDS	9484645	9484740	+

Transcript Sequence
>GWHTAAZE014300 GATCCGATGGCACTTGAGACGACTGTGGTTTACCCACAAGACCCATTCGGTAATTATAGCTACAAGGATTTTTACTCTTCTGCTTGGGGCCACGACTATATTTTACAACAACATGAAAATCAAGCTTTTGAATACAACAACAATAATAACACTAGTAGAGAGCAAGGTAATTTTTGGGATGAGTCTTCTAGTTCGGTGATGCAAAATGTGAAGGAATGTTGGGATCCCAATTCTTCCCCGGAGGCTTGCACCGGCGGTGGTGAGCGATCCGAGATGCCGGCGGCAACTGTCCTGGGCCGGCGGAAGAGGCGGAGAACCAGAAGTAGCAAGAACAAGGAGGAATTGGAGAATCAAAGGATGACTCACATTGCGGTTGAGCGGAACCGCCGCAAACAGATGAACGAGTACCTGGCTGCCATCCGATCTATGATGCCACCCTCTTATGTCCAAAGGGGTGACCAAGCATCAATAATTGGAGGAGCAATTAATTTTGTGAAGGAGTTAGAGCAACAACTTCAAACCATAGAGGCCCAAAAGAGAGCAAATGAACAACAAAAAGCCAGCAATATTAACAATAATGTTTATGGATCGTCACCACTTTTCGGCGATTTTTTCACATACCCACAGTACAGTACGCGCACTACTAGTAGCAGTAGTGGTGCATCGGGATTGGTGAACGAGGAGGAGATCAATGGCTCAGTTGCCTTTGGCGACATAGAAGTGACCATGGTCGAGTGCCACGCTAACCTCAAAATACTTTCCAAGAAAAGACCCAAACAACTCCTCAAAATTGTTGCTGGCTTACAATGTTTGTGGCTCACCATCCTCCACCTTAATGTCACCACCACGGCTGACCAAATGGTTCTCTATACCATCAGTGTTAAGCTCGAGGAAGGATGTCAGCTGACGACAGTGGAAGACATTGCTGACTTCGTTAATCACTTGCTGGGTAGAATTGAAGAAGAATCTGTTTTGAGCTGA

Network for GWHGAAZE014286

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	116	167	2.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.708
	SRR3591706	second leaf	0.244
	SRR3591707	mature leaf	0.079
	SRR3591708	Shoot apex	4.999
	SRR3591709	Stem	1.963
	SRR3591710	White floral bud	1.143
	SRR3591711	White flower	3.954
	SRR3591712	Green floral bud	2.882
	SRR3591713	Yellow flower	0.445
SRP173429	SRR8316895	Juvenile bud stage	1.780
	SRR8316896	Juvenile bud stage	1.071
	SRR8316897	Juvenile bud stage	0.649
	SRR8316894	Third green stage	0.678
	SRR8316900	Third green stage	1.658
	SRR8316901	Third green stage	1.145
	SRR8316898	Complete white stage	0.649
	SRR8316899	Complete white stage	5.204
	SRR8316903	Complete white stage	1.511
	SRR8316902	Silver flowering stage	1.777
	SRR8316904	Silver flowering stage	2.864
	SRR8316905	Silver flowering stage	0.772
	SRR8316906	Gold flowering stage	2.420
	SRR8316907	Gold flowering stage	3.793
	SRR8316908	Gold flowering stage	0.744
SRP132670	SRR6706286	Control	2.208
	SRR6706287	Light intensity 50%	2.215
	SRR6706288	Light intensity 20%	2.684
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.313
	CNS0095593	Slightly white alabastrum(diploid) 2	1.600
	CNS0095594	Slightly white alabastrum(diploid) 3	1.475
	CNS0095595	Whole white alabastrum(diploid) 2	1.438
	CNS0095596	Whole white alabastrum(diploid) 3	0.085
	CNS0095597	Whole white alabastrum(diploid) 4	2.025
	CNS0095598	Silvery flower (diploied) 1	2.646
	CNS0095599	Silvery flower (diploied) 2	3.733
	CNS0095600	Silvery flower (diploied) 3	4.577
	CNS0095601	Golden flower (diploid) 1	2.007
	CNS0095602	Golden flower (diploid) 2	2.423
	CNS0095603	Golden flower (diploid) 3	1.369
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.912
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.936
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.165
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.292
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.551
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.854
	CNS0095610	Silvery flower (tetraploid) 1	3.454
	CNS0095611	Silvery flower (tetraploid) 2	2.958
	CNS0095612	Silvery flower (tetraploid) 3	2.532
	CNS0095613	Golden flower (tetraploid) 1	0.074
	CNS0095614	Golden flower (tetraploid) 2	0.745
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	5.173
	CRR073298	Stem 2	3.916
	CRR073299	Stem 3	6.441
	CRR073300	Leaf 1	1.143
	CRR073301	Leaf 2	2.540
	CRR073302	Leaf 3	0.990
	CRR073303	Juvenile bud 1	1.608
	CRR073304	Juvenile bud 2	0.354
	CRR073305	Juvenile bud 3	2.939
	CRR073306	Third green 1	0.772
	CRR073307	Third green 2	0.711
	CRR073308	Third green 3	1.327
	CRR073309	Second white 1	1.935
	CRR073310	Second white 2	1.748
	CRR073311	Second white 3	0.655
	CRR073312	Silver flowering 1	1.613
	CRR073313	Silver flowering 2	3.658
	CRR073314	Silver flowering 3	5.074
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.074
	CRR073318	Tawny withering 1	14.074
	CRR073319	Tawny withering 2	1.089
	CRR073320	Tawny withering 3	9.985