Gene detail

Detail information of GWHGAAZE014274

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002307792.1	0	hypothetical protein POPTR_0005s27290g [Populus trichocarpa]
Swissprot	tr\|Q8W490\|PEPK2_ARATH	0	Serine/threonine-protein kinase PEPKR2
trEMBL	tr\|B9H5H9\|B9H5H9_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE94788.1}
TAIR10	AT1G12680.1	4E-176	phosphoenolpyruvate carboxylase-related kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	9283183	9286584	-
GWHAAZE00000004	mRNA	9283183	9286584	-
GWHAAZE00000004	exon	9285822	9286584	-
GWHAAZE00000004	exon	9283814	9284110	-
GWHAAZE00000004	exon	9283183	9283547	-
GWHAAZE00000004	CDS	9285822	9286584	-
GWHAAZE00000004	CDS	9283814	9284110	-
GWHAAZE00000004	CDS	9283183	9283547	-

Transcript Sequence
>GWHTAAZE014288 ATGAGGAAGAAGAGAAAGGGAAGTGATTTTTTGTGCACAAATCAAAAAGAAGTTTTGCAATCAACCCGGAATTCTGGATCGCTGGTATCAAATAGAAAATCTCATTATTCATTAGAAGATTATGCGCGGTTGAAGAAGAGGTGTAAAGGAGATACTGTAGGGTCTGAGACTGTTGGGTCATGTAACAGTAGGCTTGCTGGGATCGCGGCAACAGCGCCGGCGTGTGGGAGCTCCTCATCTGTTTTATCTGGAAGGGGAATTAAGAGGAAGATAGGGTGTATTGATGCACAAACACAGATGGGTAGGAAGAATAAGATTGAGGATGATTATGTTTCGGGTTCTACGATTGGAAAAGGAAAATTTGGGTCTGTTTGGTTGTGCCAGAGCAGGGTGAGCGGAGTGGAATTTGCATGTAAAACTTTGGTTAAAGGAGAGGAGACAGTTCACAGGGAGGTGGAGATAATGCAGCATTTATCGGGGCATCCTGGGGTTGTGACATTGGAGGCGGTCTATGAGGAATCGGATTGCTTTCATATAGTGATGGAATTGTGTTCGGGTGGAAGGTTGATTGATCTGATGGCAAAGGAGGGCCGGTATTCAGAACACAGGGCTGCTAATATATTCAAGGAATTGATGTTGGTGATTAAGTATTGTCATGATATGGGGGTTGTACATCGGGATATAAAGCCTGAGAACATTCTTCTTACTACTTCTGGGAAGATAAAGCTTGCTGATTTTGGCTTAGCCATGAGGATTGCAAATGGTCATAGCTTGGCTGGTTTAGCCGGCAGTCCGGCTTATGTTGCCCCAGAAGTTTTGTCAGAGAATTACACTGAGAAAGTGGATGTGTGGAGTGCTGGTGTCCTTTTACATGCTCTCTTGGTTGGTGTTCTCCCATTTCAAGGAGACTCATTAGATGCTGTTTTTGAGGCTATAAAGAATCTGAAGCTAGATTTCCACACTGGGATATGGGAATCTGTATCCAAACCCGCACGAGATCTCCTCGAGCGAATTCTCACAAGGGATGTTTCAGCAAGAATAACGGCAGATGAAGTATTAAGCCATCCATGGATCTTGTTTTACACCGAGCGAACCTTAAGGACACTATCTATCAAGTCAAAATCCAAAAATCATTCTGCATCACCTTCCCAGCCAACAGCCACTACATTGAAACTGGACCCAGATCGAAAAATAGGTTGTGGCTCTGTCAATGAGAATGCGGGTGGTCCAGTTGCATCATCTGGAAGTTTAGGTCAAGATTCAGAAGAGCAAGATGAGTCGGGTTTGGTTGACGCGCTAGCGGTGGCAGTTTCACAAGTGACGATATCCGAACCAAAGAGGAGCAGGTTGTGCGGACCCACCAGCCCGATTCGGGAGCAGTGCTCATCTAATGTGAATTCTAACAATCTCTGCAAAGCATTTTGA

Network for GWHGAAZE014274

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	110	358	4.80E-69

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.113
	SRR3591706	second leaf	4.570
	SRR3591707	mature leaf	4.757
	SRR3591708	Shoot apex	10.088
	SRR3591709	Stem	10.542
	SRR3591710	White floral bud	10.059
	SRR3591711	White flower	9.845
	SRR3591712	Green floral bud	8.717
	SRR3591713	Yellow flower	5.843
SRP173429	SRR8316895	Juvenile bud stage	4.245
	SRR8316896	Juvenile bud stage	5.595
	SRR8316897	Juvenile bud stage	2.626
	SRR8316894	Third green stage	2.828
	SRR8316900	Third green stage	6.123
	SRR8316901	Third green stage	5.133
	SRR8316898	Complete white stage	2.133
	SRR8316899	Complete white stage	8.515
	SRR8316903	Complete white stage	5.522
	SRR8316902	Silver flowering stage	2.353
	SRR8316904	Silver flowering stage	3.162
	SRR8316905	Silver flowering stage	1.565
	SRR8316906	Gold flowering stage	4.233
	SRR8316907	Gold flowering stage	4.140
	SRR8316908	Gold flowering stage	3.918
SRP132670	SRR6706286	Control	8.895
	SRR6706287	Light intensity 50%	8.766
	SRR6706288	Light intensity 20%	8.470
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.173
	CNS0095593	Slightly white alabastrum(diploid) 2	8.321
	CNS0095594	Slightly white alabastrum(diploid) 3	4.621
	CNS0095595	Whole white alabastrum(diploid) 2	5.234
	CNS0095596	Whole white alabastrum(diploid) 3	4.654
	CNS0095597	Whole white alabastrum(diploid) 4	4.279
	CNS0095598	Silvery flower (diploied) 1	6.406
	CNS0095599	Silvery flower (diploied) 2	5.604
	CNS0095600	Silvery flower (diploied) 3	5.631
	CNS0095601	Golden flower (diploid) 1	7.243
	CNS0095602	Golden flower (diploid) 2	8.402
	CNS0095603	Golden flower (diploid) 3	8.022
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.741
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.157
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.966
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.520
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.937
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.125
	CNS0095610	Silvery flower (tetraploid) 1	4.799
	CNS0095611	Silvery flower (tetraploid) 2	5.775
	CNS0095612	Silvery flower (tetraploid) 3	3.569
	CNS0095613	Golden flower (tetraploid) 1	2.379
	CNS0095614	Golden flower (tetraploid) 2	4.254
	CNS0095615	Golden flower (tetraploid) 3	2.824
CRA001975	CRR073297	Stem 1	10.074
	CRR073298	Stem 2	12.482
	CRR073299	Stem 3	12.488
	CRR073300	Leaf 1	10.495
	CRR073301	Leaf 2	10.993
	CRR073302	Leaf 3	6.907
	CRR073303	Juvenile bud 1	8.512
	CRR073304	Juvenile bud 2	5.245
	CRR073305	Juvenile bud 3	8.575
	CRR073306	Third green 1	3.301
	CRR073307	Third green 2	2.717
	CRR073308	Third green 3	3.450
	CRR073309	Second white 1	2.479
	CRR073310	Second white 2	2.400
	CRR073311	Second white 3	2.135
	CRR073312	Silver flowering 1	1.625
	CRR073313	Silver flowering 2	0.776
	CRR073314	Silver flowering 3	1.444
	CRR073315	Gold flowering 1	4.854
	CRR073316	Gold flowering 2	3.211
	CRR073317	Gold flowering 3	2.852
	CRR073318	Tawny withering 1	8.524
	CRR073319	Tawny withering 2	7.015
	CRR073320	Tawny withering 3	8.485