Detail information of GWHGAAZE014271


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI19229.30unnamed protein product [Vitis vinifera]
Swissprottr|Q9LTX3|PPOX1_ARATH0Probable NAD(P)HX epimerase (Precursor)
trEMBLtr|E0CRS5|E0CRS5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI19229.3}
TAIR10AT5G49970.10pyridoxin (pyrodoxamine) 5'-phosphate oxidase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene92594979274696-
GWHAAZE00000004mRNA92594979274696-
GWHAAZE00000004exon92594979259563-
GWHAAZE00000004exon92599629260057-
GWHAAZE00000004exon92607319260801-
GWHAAZE00000004exon92608799260983-
GWHAAZE00000004exon92611769261266-
GWHAAZE00000004exon92613599261409-
GWHAAZE00000004exon92656989265786-
GWHAAZE00000004exon92659759266217-
GWHAAZE00000004exon92723509272516-
GWHAAZE00000004exon92727939272898-
GWHAAZE00000004exon92729829273149-
GWHAAZE00000004exon92744029274440-
GWHAAZE00000004exon92745629274696-
GWHAAZE00000004CDS92745629274696-
GWHAAZE00000004CDS92744029274440-
GWHAAZE00000004CDS92729829273149-
GWHAAZE00000004CDS92727939272898-
GWHAAZE00000004CDS92723509272516-
GWHAAZE00000004CDS92659759266217-
GWHAAZE00000004CDS92656989265786-
GWHAAZE00000004CDS92613599261409-
GWHAAZE00000004CDS92611769261266-
GWHAAZE00000004CDS92608799260983-
GWHAAZE00000004CDS92607319260801-
GWHAAZE00000004CDS92599629260057-
GWHAAZE00000004CDS92594979259563-
Transcript Sequence

Network for GWHGAAZE014271

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03853.16YjeF_N422141.90E-35
PF01243.21Putative_PNPOx2913772.20E-28
PF10590.10PNP_phzG_C4314754.60E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K23998PPOX Microbial metabolism in diverse environments map01120
Vitamin B6 metabolismmap00750

Gene Ontology

GO term OntologyName
GO:0008615biological_processpyridoxine biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0048037molecular_functioncofactor binding
GO:0004733molecular_functionpyridoxamine-phosphate oxidase activity
GO:0010181molecular_functionFMN binding
GO:0016638molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.788
SRR3591706second leaf30.439
SRR3591707mature leaf27.421
SRR3591708Shoot apex36.882
SRR3591709Stem27.831
SRR3591710White floral bud27.920
SRR3591711White flower30.759
SRR3591712Green floral bud36.550
SRR3591713Yellow flower29.752
SRP173429 SRR8316895Juvenile bud stage 23.755
SRR8316896Juvenile bud stage 31.702
SRR8316897Juvenile bud stage 15.006
SRR8316894Third green stage 15.182
SRR8316900Third green stage 45.183
SRR8316901Third green stage 41.268
SRR8316898Complete white stage 17.221
SRR8316899Complete white stage 50.409
SRR8316903Complete white stage 21.991
SRR8316902Silver flowering stage13.577
SRR8316904Silver flowering stage18.494
SRR8316905Silver flowering stage9.415
SRR8316906Gold flowering stage 30.273
SRR8316907Gold flowering stage 30.618
SRR8316908Gold flowering stage 33.187
SRP132670SRR6706286Control29.714
SRR6706287Light intensity 50%31.946
SRR6706288Light intensity 20%35.173
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.643
CNS0095593Slightly white alabastrum(diploid) 231.033
CNS0095594Slightly white alabastrum(diploid) 329.938
CNS0095595Whole white alabastrum(diploid) 227.065
CNS0095596Whole white alabastrum(diploid) 331.571
CNS0095597Whole white alabastrum(diploid) 426.570
CNS0095598Silvery flower (diploied) 123.254
CNS0095599Silvery flower (diploied) 227.470
CNS0095600Silvery flower (diploied) 341.635
CNS0095601Golden flower (diploid) 122.150
CNS0095602Golden flower (diploid) 234.966
CNS0095603Golden flower (diploid) 335.687
CNS0095604Slightly white alabastrum(tetraploid) 135.870
CNS0095605Slightly white alabastrum(tetraploid) 235.111
CNS0095606Slightly white alabastrum(tetraploid) 346.688
CNS0095607Whole white alabastrum(tetraploid) 126.686
CNS0095608Whole white alabastrum(tetraploid) 225.434
CNS0095609Whole white alabastrum(tetraploid) 340.019
CNS0095610Silvery flower (tetraploid) 141.640
CNS0095611Silvery flower (tetraploid) 252.778
CNS0095612Silvery flower (tetraploid) 347.065
CNS0095613Golden flower (tetraploid) 131.148
CNS0095614Golden flower (tetraploid) 235.963
CNS0095615Golden flower (tetraploid) 327.943
CRA001975CRR073297Stem 153.136
CRR073298Stem 245.369
CRR073299Stem 349.927
CRR073300Leaf 151.264
CRR073301Leaf 245.941
CRR073302Leaf 356.864
CRR073303Juvenile bud 155.637
CRR073304Juvenile bud 242.917
CRR073305Juvenile bud 352.482
CRR073306Third green 130.459
CRR073307Third green 222.662
CRR073308Third green 328.015
CRR073309Second white 135.787
CRR073310Second white 230.920
CRR073311Second white 328.253
CRR073312Silver flowering 121.447
CRR073313Silver flowering 228.063
CRR073314Silver flowering 320.349
CRR073315Gold flowering 140.316
CRR073316Gold flowering 255.283
CRR073317Gold flowering 341.860
CRR073318Tawny withering 132.641
CRR073319Tawny withering 233.940
CRR073320Tawny withering 339.536