Gene detail

Detail information of GWHGAAZE014265

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009759754.1	0	PREDICTED: serine/threonine-protein kinase-like protein At3g51990 [Nicotiana sylvestris]
Swissprot	tr\|Q9SGN7\|CCR12_ARATH	5E-136	Serine/threonine-protein kinase-like protein At1g28390
trEMBL	tr\|M1AZD6\|M1AZD6_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400033597}
TAIR10	AT1G28390.1	1E-110	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	9182621	9184132	+
GWHAAZE00000004	mRNA	9182621	9184132	+
GWHAAZE00000004	exon	9182621	9184132	+
GWHAAZE00000004	CDS	9182621	9184132	+

Transcript Sequence
>GWHTAAZE014279 ATGGGTTATCTCTCCTGTTCTTGTAATGCAGAGTCCGCGATCTCCACTTGCGATCCATACAACTGGGACTTTTCTAACAAGAAAAACAAAAATCTACCTACCAAATCCTTCAAGCTCAGAGACTTCTCTTACTCACATCTCCAATCAGCCACCAATGCCTTCTCCGATTCCAACTTCCTCGGAAAAGGCAGCCACGGTTCCGTCTACAAAGCCCACCTCGATAACGGCAAGCTCGTCGCAGCCGTCAAAAGGACAATTTTAACCCCAGACAAATTCAAATTTACTAACAATCCCTCCGATAACGAGATTGAAATACTCTCTCGAGTACGAAGCCCCAGGCTTGTTAATTTGTTAGGATTCGGCGTTGATTCGAGCCACAGGACTTTAATTGTCGTTGAGTTCATGCCAAACGGCTCTTTGTATGATTTACTCCACACGGCTAATAAACCGCCCGGCTGGGCTAAACGTCTCCGCCTCGCTTCACAGGTAGCTAAAGCTGTTCAGCTCCTCCACTCGTCAAACCCGCCCGTTATTCACAGAGACATAAAGTCATCCAACGTTTTAATCGACGGTGAATGGAACGCCAGGCTCGGTGACTTCGGCTTGGCTCTGAGGGGACACGTAGAGGACGTCCGTTTAAGTTGCACACCTCCTGCTGGGACTTTAGGATATCTCGACCCTGGCTATCTTGCGCCGGGTGATCTCAGCACCAAGAGCGATGTTTTCAGTTTCGGCATACTTTTATTGGAGATTATAAGCGGACGGAATGCTATTGATATGAATTACAGTCCTCCGTCGGTGGTGGACTGGGCAGTTCCGATGATTAAGTCCGGCGACTTCGCCGGAATTTGTGACCTGAGGATCGGTCCGCCGGAGGATTCGGCGGCAATAGAGAAGCTGTCGATGTTGGCAGTGAAATGCGTCAGATCGACGGCAGAGAAGCGGCCGGATATGGCGGACGTGGTGGAGTGGTTGAGAGTTTTGAGGAAGAGAGTAAAATCGCCGATCTGGAATAATCTGCGGCGGCGCGTGAGGAGATCGTCACCGACCACTAAATATAAACCGTTCGACGATAGTAGGGAGATGAGTAAGACCTTGAGAACAGGAGGATGTAGGAGGAACAGGAAAATATCCAGTGTAGCGAGTGTAGATTTAGTCAGTGATGCAATTGACGTGGCGAGCGATCGTATGGGTAGATCTAAATCTATTGGTTCAGTAACTGACACTAAATTGCGGCAGTTGGATTCAAATATTGGTGGAAATAGTAACAGTAGTGTAGCTAATGCGGTGGGGTTGTATAGGAAGAAGGGGGGATTGGGTGTGAGTATGCCTACGGTAAGACTGAGCAAGTCAAGGTCAGCAGGGGTGTTGCAAGGCACACGATTGATTGACAACAGTGGGGTTTTTAGGAATCCTAATGGTAAAGAATTTGAAGAATCCAAGTTGTTGATAATAAAAATAAAAAATAAATAATATAATATAATAATAGAAATGCATCTCCCGTGTGTGTGA

Network for GWHGAAZE014265

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	56	323	2.90E-36

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CR4L

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.569
	SRR3591706	second leaf	3.637
	SRR3591707	mature leaf	2.208
	SRR3591708	Shoot apex	10.129
	SRR3591709	Stem	7.050
	SRR3591710	White floral bud	1.390
	SRR3591711	White flower	1.346
	SRR3591712	Green floral bud	1.514
	SRR3591713	Yellow flower	0.201
SRP173429	SRR8316895	Juvenile bud stage	2.478
	SRR8316896	Juvenile bud stage	5.078
	SRR8316897	Juvenile bud stage	0.540
	SRR8316894	Third green stage	0.804
	SRR8316900	Third green stage	1.313
	SRR8316901	Third green stage	1.020
	SRR8316898	Complete white stage	2.002
	SRR8316899	Complete white stage	4.748
	SRR8316903	Complete white stage	2.192
	SRR8316902	Silver flowering stage	0.719
	SRR8316904	Silver flowering stage	0.500
	SRR8316905	Silver flowering stage	0.433
	SRR8316906	Gold flowering stage	0.322
	SRR8316907	Gold flowering stage	0.833
	SRR8316908	Gold flowering stage	0.086
SRP132670	SRR6706286	Control	2.259
	SRR6706287	Light intensity 50%	1.919
	SRR6706288	Light intensity 20%	1.990
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.713
	CNS0095593	Slightly white alabastrum(diploid) 2	1.392
	CNS0095594	Slightly white alabastrum(diploid) 3	4.783
	CNS0095595	Whole white alabastrum(diploid) 2	1.265
	CNS0095596	Whole white alabastrum(diploid) 3	1.113
	CNS0095597	Whole white alabastrum(diploid) 4	1.116
	CNS0095598	Silvery flower (diploied) 1	2.130
	CNS0095599	Silvery flower (diploied) 2	4.125
	CNS0095600	Silvery flower (diploied) 3	2.230
	CNS0095601	Golden flower (diploid) 1	4.507
	CNS0095602	Golden flower (diploid) 2	1.885
	CNS0095603	Golden flower (diploid) 3	2.125
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.783
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.680
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.902
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.651
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.010
	CNS0095610	Silvery flower (tetraploid) 1	1.464
	CNS0095611	Silvery flower (tetraploid) 2	0.841
	CNS0095612	Silvery flower (tetraploid) 3	0.247
	CNS0095613	Golden flower (tetraploid) 1	0.052
	CNS0095614	Golden flower (tetraploid) 2	0.237
	CNS0095615	Golden flower (tetraploid) 3	0.080
CRA001975	CRR073297	Stem 1	3.838
	CRR073298	Stem 2	3.879
	CRR073299	Stem 3	6.531
	CRR073300	Leaf 1	1.904
	CRR073301	Leaf 2	1.812
	CRR073302	Leaf 3	1.785
	CRR073303	Juvenile bud 1	4.785
	CRR073304	Juvenile bud 2	1.294
	CRR073305	Juvenile bud 3	5.719
	CRR073306	Third green 1	1.188
	CRR073307	Third green 2	2.548
	CRR073308	Third green 3	2.153
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.059
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.718
	CRR073315	Gold flowering 1	0.436
	CRR073316	Gold flowering 2	0.493
	CRR073317	Gold flowering 3	1.179
	CRR073318	Tawny withering 1	7.793
	CRR073319	Tawny withering 2	3.029
	CRR073320	Tawny withering 3	9.743