Gene detail

Detail information of GWHGAAZE014248

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003634421.1	0	PREDICTED: serine/threonine-protein kinase CTR1 [Vitis vinifera]
Swissprot	tr\|Q05609\|CTR1_ARATH	2E-107	Serine/threonine-protein kinase CTR1
trEMBL	tr\|E0CRX8\|E0CRX8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19282.3}
TAIR10	AT4G24480.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	8723008	8731070	+
GWHAAZE00000004	mRNA	8723008	8731070	+
GWHAAZE00000004	exon	8723008	8723766	+
GWHAAZE00000004	exon	8724976	8725274	+
GWHAAZE00000004	exon	8725357	8725501	+
GWHAAZE00000004	exon	8726356	8726468	+
GWHAAZE00000004	exon	8727024	8727229	+
GWHAAZE00000004	exon	8727517	8727942	+
GWHAAZE00000004	exon	8728058	8728098	+
GWHAAZE00000004	exon	8728362	8728430	+
GWHAAZE00000004	exon	8728670	8728770	+
GWHAAZE00000004	exon	8728869	8728953	+
GWHAAZE00000004	exon	8729039	8729137	+
GWHAAZE00000004	exon	8730111	8730242	+
GWHAAZE00000004	exon	8730403	8730497	+
GWHAAZE00000004	exon	8730950	8731070	+
GWHAAZE00000004	CDS	8723008	8723766	+
GWHAAZE00000004	CDS	8724976	8725274	+
GWHAAZE00000004	CDS	8725357	8725501	+
GWHAAZE00000004	CDS	8726356	8726468	+
GWHAAZE00000004	CDS	8727024	8727229	+
GWHAAZE00000004	CDS	8727517	8727942	+
GWHAAZE00000004	CDS	8728058	8728098	+
GWHAAZE00000004	CDS	8728362	8728430	+
GWHAAZE00000004	CDS	8728670	8728770	+
GWHAAZE00000004	CDS	8728869	8728953	+
GWHAAZE00000004	CDS	8729039	8729137	+
GWHAAZE00000004	CDS	8730111	8730242	+
GWHAAZE00000004	CDS	8730403	8730497	+
GWHAAZE00000004	CDS	8730950	8731070	+

Transcript Sequence
>GWHTAAZE014262 ATGCCGCATCGAACAACATACTTCTTCCCTAGGCAATTTCCTGATCGTAGATCAGATACATCGTCAAAGTCTCTGTTGGATCACGAGAAAAAGATCGCAAAAGAGAGCTTTTCTAGGGGCGATAGTGACGTTAAAGCATCAAATGTTGCCAAGGAAGTAGATACAACTGTATCCAATACTACTCGTTTCACGGCAGACAAGATTCACGGAAAGCAGTTGGCAGCTTTTGTCAACTGGTTGTCTGAGAAAAAAGGAGACAAGTCAGGGCACGTGAAGCTCAACGCAATTGACGACGATCATGACCTCTTGCTACCGCCGGTGGCAACGGAGCCAGAGGCGGTTGGTGCCAGTAAAGACAGGGATTTCGACCGAGACATATCGTTGCAGAGGTTGTCTAGTACTGAAAGTAGTTATGCTGGTAAAGGGCGGGATTTTGAACGGCAGTTCTCTCTCCAGAGGCTGTCGAGTGGGAGTAGTTATGCGGGGAGTTTGTTTTCGGGGACGACATTGGATGGGAACCTGTCGAGCTGTGCTTATAAGGATTCGCAGGTGTCGACGACAACGAGAGAAGAGGAGGAAGAGAATAGAGGAGGTAGTTTAGCACAGAGGGCGCGAGAGAGTTATTATTTGCAGCTTTCTCTCGCAAAGCGGCTTACTGAGCAAGCAACGCTCGGTAGTGAGCCTTTACTCCTGCAAGATTGTGGACGGGAGATTAGCGGTTTACCTTATGATGCTGAGACTGTCTCCTATCGTCTCTGGGTTAGTGGTTGCTTGTCATATACTGATAAGATATCAGATGGATTTTATAACATAATGGGAATGAATCCGCATCTGTGGGTATTATGCAATGAGTTTGAGGAAGGTAGACGACTACCACCTTTAATGTCCCTTCGAGCCATCTTGCCTTGTGATACATCCATGGAGGTGGTTCTTATTGATCGACAAGGGGATGCACGGCTGAGGGATTTGGAAGATAAAGCTCAAGAACTATATTTTTCTGCTGAAAATACATTGGTGCTAGCAGGGAAACTTGGAAAACTTGTTGCTGTCCATATGGGGGGATCTTTTACAATGGAGCAAGACGATCTCCACACACGTTGGAAATTGGTTAGCAAGAGATTAAAGGATTTTCAGAAGTGTATCGTGCTCCCCATTGGCAACTTATCCATGGGACTCTGCAGGCATCGTGCTATACTTTTCAAGAAATTGGCAGACTATATAGGACTGCCATGCCGGATAGCTCGAGGTTGCAAGTATTGTGTTACTGATCATCGGTCTTCATGTCTTGTCAAAATTGAGGATGAGAAGTCCTCGAGGGAATTTGTAGTTGATCTAGTTGGGGAACCAGGAAATGTCCATGGTCCAGATTCCTCTATCAATGGTAGTCTACTTTTTTCAGTGCCTTCACCATTTAAGATTTCTCTTTTACAAGAATTTCAACAACCTTACATGGACAATGTCTTTAGTCAAATTTTACGTTCAAAACAAACATGTGCTCCTGGGGAAAAGCCTCTATATTCAGGGAGTGAGGAAGGAGGTCATCTGGTGGAGGATTCTGACCGCATTAAAAATCCAAAGGAGATTGTGTATAATACAATTACTCGAGAATGTGGAATATGTGGAGCACCTGAAGCTGGTACTGCTGGTTCTGGGATCACGACAGATGAAAATCCTAAACCTGGTGGAGACAAAGTAGATTTTGGGCGAGTTTACAAAAAAGAACTAGTTTTATCCAGAACTCCACTTATAAGCTCTTCCTTCAGACCACTTCCTAAAGTGAACTCATCTGGTCAATCAGATGTGTTGAAGGTTGAGAATGCTCCTGAGAATCGAGAGGAACTTTCTGCTGTAACCATCCCGAGGTACGTGACTCTGGAGCCTTCTCTTGCTATGGATTGGCTTGAGATCTCTTGGGATGAGTTACATATCAAGGAGCGCATTGGTGCTGGTTCATTTGGGACAGTGCATCGTGCTGAATGGCATGGATCGGATGTCGCAGTCAAGGTTTTGACCGTACAGGATTTTCATGACGATCAATTGAAGGAGTTTCTAAGGGAGGTTGCCATAATGAAACGTGTCCGTCATCCAAACGTGGTTCTGTTCATGGGTGCAGTCACAAAGCGTCCACATTTGTCAATTGTGACAGAATATCTACCTAGAGGTAGTCTATACCGTCTCATACACCGGCCAACAGCTGGGGAAACATTGGATCAGAGACGGCGTTTACGTATGGCTTTGGATGTGGCGAAGGGTATCAATTATCTTCATTGCCTTAGCCCTTCCATAGTCCACTGGGATCTTAAATCTCCAAACTTGTTGGTTGACAAAAATTGGACTGTTAAGCCAGAGTGGATGGCTCCCGAATTCCTTAGGGGAGAGCCCTCAAATGAGAAGTCTGACGTTTACAGTTATGGAGTGATTTTATGGGAGCTTGTGACCATGCAACAGCCTTGGAGTGGTCTTGGCCCAGCCCAGGTTGTTGGAGCTGTTGCTTTCCAGAATAGAAGGCTCGCAATTCCACCAAATACTTCCCCAATATTGGTTTCTCTCATGGAATCTTGCTGGGCTGAATCTCTAGTTTCCATTGACAGTGACCCTTCTCAGCGTCCCTCTTTCAAGACTATCGTCGAGACGCTGAAGAAGATACTGAAGTCGCCACCCCAGATGACACGGATGGGAGGAGGACAGTAA

Network for GWHGAAZE014248

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14381.7	EDR1	245	452	2.90E-74
PF07714.18	PK_Tyr_Ser-Thr	641	781	3.20E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.559
	SRR3591706	second leaf	10.090
	SRR3591707	mature leaf	12.834
	SRR3591708	Shoot apex	4.083
	SRR3591709	Stem	3.080
	SRR3591710	White floral bud	0.783
	SRR3591711	White flower	0.845
	SRR3591712	Green floral bud	0.950
	SRR3591713	Yellow flower	0.751
SRP173429	SRR8316895	Juvenile bud stage	0.506
	SRR8316896	Juvenile bud stage	1.210
	SRR8316897	Juvenile bud stage	0.614
	SRR8316894	Third green stage	0.311
	SRR8316900	Third green stage	1.813
	SRR8316901	Third green stage	2.854
	SRR8316898	Complete white stage	2.385
	SRR8316899	Complete white stage	4.072
	SRR8316903	Complete white stage	2.712
	SRR8316902	Silver flowering stage	0.268
	SRR8316904	Silver flowering stage	0.351
	SRR8316905	Silver flowering stage	0.160
	SRR8316906	Gold flowering stage	0.596
	SRR8316907	Gold flowering stage	0.627
	SRR8316908	Gold flowering stage	0.787
SRP132670	SRR6706286	Control	1.472
	SRR6706287	Light intensity 50%	2.011
	SRR6706288	Light intensity 20%	2.293
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.415
	CNS0095593	Slightly white alabastrum(diploid) 2	0.136
	CNS0095594	Slightly white alabastrum(diploid) 3	0.609
	CNS0095595	Whole white alabastrum(diploid) 2	0.317
	CNS0095596	Whole white alabastrum(diploid) 3	0.174
	CNS0095597	Whole white alabastrum(diploid) 4	0.182
	CNS0095598	Silvery flower (diploied) 1	0.256
	CNS0095599	Silvery flower (diploied) 2	0.163
	CNS0095600	Silvery flower (diploied) 3	0.204
	CNS0095601	Golden flower (diploid) 1	0.139
	CNS0095602	Golden flower (diploid) 2	0.131
	CNS0095603	Golden flower (diploid) 3	0.154
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.442
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.654
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.120
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.120
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.544
	CNS0095610	Silvery flower (tetraploid) 1	0.201
	CNS0095611	Silvery flower (tetraploid) 2	0.163
	CNS0095612	Silvery flower (tetraploid) 3	0.378
	CNS0095613	Golden flower (tetraploid) 1	0.347
	CNS0095614	Golden flower (tetraploid) 2	0.244
	CNS0095615	Golden flower (tetraploid) 3	0.298
CRA001975	CRR073297	Stem 1	1.222
	CRR073298	Stem 2	1.122
	CRR073299	Stem 3	0.998
	CRR073300	Leaf 1	2.808
	CRR073301	Leaf 2	1.438
	CRR073302	Leaf 3	0.745
	CRR073303	Juvenile bud 1	2.919
	CRR073304	Juvenile bud 2	8.214
	CRR073305	Juvenile bud 3	1.470
	CRR073306	Third green 1	0.194
	CRR073307	Third green 2	0.235
	CRR073308	Third green 3	0.126
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.389
	CRR073311	Second white 3	0.266
	CRR073312	Silver flowering 1	0.149
	CRR073313	Silver flowering 2	0.078
	CRR073314	Silver flowering 3	0.280
	CRR073315	Gold flowering 1	2.650
	CRR073316	Gold flowering 2	4.389
	CRR073317	Gold flowering 3	2.988
	CRR073318	Tawny withering 1	2.974
	CRR073319	Tawny withering 2	2.223
	CRR073320	Tawny withering 3	1.957