Gene detail

Detail information of GWHGAAZE014228

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFR78197.1	8.1723E-122	transcription factor bHLH [Vitis vinifera]
Swissprot	tr\|Q9LSL1\|BH093_ARATH	7E-82	Transcription factor bHLH93
trEMBL	tr\|J9UVQ2\|J9UVQ2_VITVI	3E-122	Transcription factor bHLH {ECO:0000313\|EMBL:AFR78197.1}
TAIR10	AT5G65640.1	9E-68	beta HLH protein 93

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	8289038	8290451	-
GWHAAZE00000004	mRNA	8289038	8290451	-
GWHAAZE00000004	exon	8290165	8290451	-
GWHAAZE00000004	exon	8289876	8289999	-
GWHAAZE00000004	exon	8289598	8289765	-
GWHAAZE00000004	exon	8289240	8289407	-
GWHAAZE00000004	exon	8289038	8289124	-
GWHAAZE00000004	CDS	8290165	8290451	-
GWHAAZE00000004	CDS	8289876	8289999	-
GWHAAZE00000004	CDS	8289598	8289765	-
GWHAAZE00000004	CDS	8289240	8289407	-
GWHAAZE00000004	CDS	8289038	8289124	-

Transcript Sequence
>GWHTAAZE014242 GAGCTATTAGCTCTAAGAAGTGAGCCTTGGGAAGCCACAATCCCAAATGGAATAAATGATTTCTACACAAATGGGTGGAGCAATATTGTTGAAAATCCACTTGCTAATTTCCCTCAAAACTCGTCCTTTGAAGAGCTATCATTGCCATTTGATCAGAGCCTCAACTGTTCATCATTCAGTGAATTCTACTACCCATTTGGGGAAGAAGTGTTATCAGCACCAGAGCTTACTGATTCATCAAACAACAAGCTTGATGATGGTACTCCACCATTTCCCACTCCAGAAGAAAAGAACAAAGTGAAGAAACTAGATGGGCAGCCATCAAAGAATCTAATGGCTGAGAGAAGGAGAAGGAAGAGGTTAAATGACAGGCTTTCCATGCTTAGATCAGTTGTTCCTAAGATCAGCAAGATGGACAGAACATCAATACTCGGTGATACTATAGATTACATGAAGGAACTGCTAGAGAGAATCAATAACTTGCAAGAAGACATTGAAGGGGGTCCAAATCAGCTGAGTTTAACAACCATCTTCAAGGATGTGAAGCCTAATGAAATCCTTGTGAGAAATTCACCTAAGTTTGATGTGGAGAGAAGGAATATGGATACCCGAATCGAGATATGCTGCGCGGGGAAGCCTGGTTTGTTGCTATCAACAGTGACTACCTTAGAAGCATTAGGCCTTGAGATTCAACAGTGTGTTATTAGTTGCTTCAATGACTTTGCTTTGCAAGCTTCTTGCTCAGAGGAATTGGAGCAAAAAGGAATTATAAGTGAAGAGGAAATAAAGCAGGCATTGTTTAGAAATGCAGGATATGGAGGAAGGTGTCTGTGA

Network for GWHGAAZE014228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	111	154	1.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.096
	SRR3591706	second leaf	25.289
	SRR3591707	mature leaf	10.249
	SRR3591708	Shoot apex	24.552
	SRR3591709	Stem	38.362
	SRR3591710	White floral bud	6.114
	SRR3591711	White flower	14.212
	SRR3591712	Green floral bud	1.399
	SRR3591713	Yellow flower	0.842
SRP173429	SRR8316895	Juvenile bud stage	5.622
	SRR8316896	Juvenile bud stage	3.575
	SRR8316897	Juvenile bud stage	0.599
	SRR8316894	Third green stage	3.483
	SRR8316900	Third green stage	1.736
	SRR8316901	Third green stage	1.628
	SRR8316898	Complete white stage	0.137
	SRR8316899	Complete white stage	2.797
	SRR8316903	Complete white stage	1.748
	SRR8316902	Silver flowering stage	0.178
	SRR8316904	Silver flowering stage	1.794
	SRR8316905	Silver flowering stage	0.491
	SRR8316906	Gold flowering stage	0.187
	SRR8316907	Gold flowering stage	0.623
	SRR8316908	Gold flowering stage	3.476
SRP132670	SRR6706286	Control	1.271
	SRR6706287	Light intensity 50%	1.868
	SRR6706288	Light intensity 20%	1.763
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.869
	CNS0095593	Slightly white alabastrum(diploid) 2	3.378
	CNS0095594	Slightly white alabastrum(diploid) 3	2.846
	CNS0095595	Whole white alabastrum(diploid) 2	1.606
	CNS0095596	Whole white alabastrum(diploid) 3	1.094
	CNS0095597	Whole white alabastrum(diploid) 4	0.744
	CNS0095598	Silvery flower (diploied) 1	26.026
	CNS0095599	Silvery flower (diploied) 2	13.531
	CNS0095600	Silvery flower (diploied) 3	2.175
	CNS0095601	Golden flower (diploid) 1	11.097
	CNS0095602	Golden flower (diploid) 2	4.324
	CNS0095603	Golden flower (diploid) 3	2.934
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.083
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.385
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.888
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.019
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.084
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.411
	CNS0095610	Silvery flower (tetraploid) 1	3.114
	CNS0095611	Silvery flower (tetraploid) 2	4.791
	CNS0095612	Silvery flower (tetraploid) 3	1.902
	CNS0095613	Golden flower (tetraploid) 1	0.237
	CNS0095614	Golden flower (tetraploid) 2	1.538
	CNS0095615	Golden flower (tetraploid) 3	0.394
CRA001975	CRR073297	Stem 1	4.071
	CRR073298	Stem 2	4.544
	CRR073299	Stem 3	4.238
	CRR073300	Leaf 1	0.950
	CRR073301	Leaf 2	0.910
	CRR073302	Leaf 3	0.070
	CRR073303	Juvenile bud 1	0.168
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.150
	CRR073306	Third green 1	2.988
	CRR073307	Third green 2	2.961
	CRR073308	Third green 3	3.417
	CRR073309	Second white 1	1.754
	CRR073310	Second white 2	3.986
	CRR073311	Second white 3	1.178
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.365
	CRR073314	Silver flowering 3	0.091
	CRR073315	Gold flowering 1	2.749
	CRR073316	Gold flowering 2	6.337
	CRR073317	Gold flowering 3	3.308
	CRR073318	Tawny withering 1	100.213
	CRR073319	Tawny withering 2	69.707
	CRR073320	Tawny withering 3	95.973