Detail information of GWHGAAZE014191


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010273523.10PREDICTED: pre-mRNA-processing protein 40A [Nelumbo nucifera]
Swissprottr|B6EUA9|PR40A_ARATH0Pre-mRNA-processing protein 40A
trEMBLtr|K4CD33|K4CD33_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc07g022760.2.1}
TAIR10AT1G44910.12E-179pre-mRNA-processing protein 40A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene74982767524194-
GWHAAZE00000004mRNA74982767524194-
GWHAAZE00000004exon75238437524194-
GWHAAZE00000004exon75157657515799-
GWHAAZE00000004exon75152387515303-
GWHAAZE00000004exon75148367515138-
GWHAAZE00000004exon75145637514748-
GWHAAZE00000004exon75125807512650-
GWHAAZE00000004exon75123537512422-
GWHAAZE00000004exon75102067510258-
GWHAAZE00000004exon75100567510113-
GWHAAZE00000004exon75096227509968-
GWHAAZE00000004exon75094497509521-
GWHAAZE00000004exon75090537509151-
GWHAAZE00000004exon75088757508943-
GWHAAZE00000004exon75087247508801-
GWHAAZE00000004exon75084507508536-
GWHAAZE00000004exon75078057507839-
GWHAAZE00000004exon75075367507641-
GWHAAZE00000004exon75065597506639-
GWHAAZE00000004exon75063887506480-
GWHAAZE00000004exon75062687506321-
GWHAAZE00000004exon75060767506192-
GWHAAZE00000004exon75057997505897-
GWHAAZE00000004exon75029387502985-
GWHAAZE00000004exon75012547501361-
GWHAAZE00000004exon75011007501164-
GWHAAZE00000004exon74985117498667-
GWHAAZE00000004exon74982767498416-
GWHAAZE00000004CDS75238437524194-
GWHAAZE00000004CDS75157657515799-
GWHAAZE00000004CDS75152387515303-
GWHAAZE00000004CDS75148367515138-
GWHAAZE00000004CDS75145637514748-
GWHAAZE00000004CDS75125807512650-
GWHAAZE00000004CDS75123537512422-
GWHAAZE00000004CDS75102067510258-
GWHAAZE00000004CDS75100567510113-
GWHAAZE00000004CDS75096227509968-
GWHAAZE00000004CDS75094497509521-
GWHAAZE00000004CDS75090537509151-
GWHAAZE00000004CDS75088757508943-
GWHAAZE00000004CDS75087247508801-
GWHAAZE00000004CDS75084507508536-
GWHAAZE00000004CDS75078057507839-
GWHAAZE00000004CDS75075367507641-
GWHAAZE00000004CDS75065597506639-
GWHAAZE00000004CDS75063887506480-
GWHAAZE00000004CDS75062687506321-
GWHAAZE00000004CDS75060767506192-
GWHAAZE00000004CDS75057997505897-
GWHAAZE00000004CDS75029387502985-
GWHAAZE00000004CDS75012547501361-
GWHAAZE00000004CDS75011007501164-
GWHAAZE00000004CDS74985117498667-
GWHAAZE00000004CDS74982767498416-
Transcript Sequence

Network for GWHGAAZE014191

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00397.27WW3263532.00E-08
PF00397.27WW3693947.70E-07
PF01846.20FF5726214.70E-15
PF01846.20FF6396892.80E-14
PF01846.20FF7087564.90E-05
PF01846.20FF7818362.80E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12821PRPF40, PRP40 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.010
SRR3591706second leaf29.196
SRR3591707mature leaf38.099
SRR3591708Shoot apex46.938
SRR3591709Stem47.344
SRR3591710White floral bud43.664
SRR3591711White flower55.110
SRR3591712Green floral bud37.419
SRR3591713Yellow flower39.616
SRP173429 SRR8316895Juvenile bud stage 26.467
SRR8316896Juvenile bud stage 39.965
SRR8316897Juvenile bud stage 18.472
SRR8316894Third green stage 18.248
SRR8316900Third green stage 34.545
SRR8316901Third green stage 33.810
SRR8316898Complete white stage 9.569
SRR8316899Complete white stage 35.411
SRR8316903Complete white stage 25.998
SRR8316902Silver flowering stage14.587
SRR8316904Silver flowering stage23.157
SRR8316905Silver flowering stage10.645
SRR8316906Gold flowering stage 33.483
SRR8316907Gold flowering stage 29.784
SRR8316908Gold flowering stage 33.056
SRP132670SRR6706286Control35.618
SRR6706287Light intensity 50%36.841
SRR6706288Light intensity 20%32.857
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.916
CNS0095593Slightly white alabastrum(diploid) 224.922
CNS0095594Slightly white alabastrum(diploid) 329.564
CNS0095595Whole white alabastrum(diploid) 217.585
CNS0095596Whole white alabastrum(diploid) 315.731
CNS0095597Whole white alabastrum(diploid) 417.634
CNS0095598Silvery flower (diploied) 134.247
CNS0095599Silvery flower (diploied) 225.199
CNS0095600Silvery flower (diploied) 328.856
CNS0095601Golden flower (diploid) 127.423
CNS0095602Golden flower (diploid) 228.754
CNS0095603Golden flower (diploid) 328.856
CNS0095604Slightly white alabastrum(tetraploid) 123.073
CNS0095605Slightly white alabastrum(tetraploid) 221.230
CNS0095606Slightly white alabastrum(tetraploid) 339.604
CNS0095607Whole white alabastrum(tetraploid) 116.876
CNS0095608Whole white alabastrum(tetraploid) 213.082
CNS0095609Whole white alabastrum(tetraploid) 323.388
CNS0095610Silvery flower (tetraploid) 139.533
CNS0095611Silvery flower (tetraploid) 230.078
CNS0095612Silvery flower (tetraploid) 328.187
CNS0095613Golden flower (tetraploid) 121.486
CNS0095614Golden flower (tetraploid) 227.054
CNS0095615Golden flower (tetraploid) 325.280
CRA001975CRR073297Stem 141.440
CRR073298Stem 241.992
CRR073299Stem 337.321
CRR073300Leaf 132.898
CRR073301Leaf 227.998
CRR073302Leaf 318.449
CRR073303Juvenile bud 120.277
CRR073304Juvenile bud 216.425
CRR073305Juvenile bud 329.015
CRR073306Third green 18.969
CRR073307Third green 26.966
CRR073308Third green 312.632
CRR073309Second white 17.135
CRR073310Second white 212.434
CRR073311Second white 310.874
CRR073312Silver flowering 17.531
CRR073313Silver flowering 26.809
CRR073314Silver flowering 38.636
CRR073315Gold flowering 19.787
CRR073316Gold flowering 219.319
CRR073317Gold flowering 34.923
CRR073318Tawny withering 117.412
CRR073319Tawny withering 219.439
CRR073320Tawny withering 318.960