Gene detail

Detail information of GWHGAAZE014185

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285416.1	0	PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Vitis vinifera]
Swissprot	tr\|Q9FZI8\|LCAT1_ARATH	0	Lecithin-cholesterol acyltransferase-like 1
trEMBL	tr\|F6H183\|F6H183_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45734.1}
TAIR10	AT1G27480.1	2E-161	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7374212	7375825	+
GWHAAZE00000004	mRNA	7374212	7375825	+
GWHAAZE00000004	exon	7374212	7374600	+
GWHAAZE00000004	exon	7374922	7375825	+
GWHAAZE00000004	CDS	7374212	7374600	+
GWHAAZE00000004	CDS	7374922	7375825	+

Transcript Sequence
>GWHTAAZE014199 ATGACGGTGGTGCCGATCAAAGTGGCCCTAATATTTATATCAATGGCTATAATGTTGCAAGCGTGTCAGGCTAGCAGCTACCTCCACCCTCTGATTCTGGTGCCTGGTAGTGGCGGCAACCAACTGGAGGCTCGGCTGACGGCATCTTACAAGCCTACGAGCTTGTTCTGCAGCCGGCTTAACCCGATTCACAAGGACAAGGATGGCTGGTTCAGGCTATGGTTCGACCCCACCGTCCTCTTAGCTCCCTTCACACGGTGCTTTGCTGAGCGAATGAGTCTCTACTACGAACCAGAGGTGGATGATTACCGTAATGCCCCTGGGGTAGAGACTAGAGTCCCTCACTTTGGTTCCACCCAATCCCTTCTCTACCTTGATCCTCACCTCAAGCACATCACATCATACATGGAACCCTTGGTGAAATCCATGGAAAAACTCGGCTACGTTGACAGTCAAACCCTATTTGGTGCTCCATACGATTTCCGATATGGGTTAGCACCAGAAGGTCACCCATCCAAAGTGGGAACCAAGTACCTCCAAGACCTCAAAGCTTTAATAGAAGAAGCGAGCACTTCCAATGGGGGAAAGCCAGTTATTCTCCTCTCCCACAGCCTAGGAGGTCTCTTTGTCCTCCATCTCCTCAACCGAAACTCGCCCTCTTGGCGCCAAAAATATATTAAACACTTTGTAGCCCTCTCCGCTCCTTGGGGTGGCACAGTCCAAGAAATGCTCACTTTTGCCTCAGGCTATTCCCTTGGTGTGCCTTTGGTCAAACCATTGCTAGTAAGAGAAGAGCAAAGGAGCTCGGAAAGTAACCTATGGCTTATGCCTTCACCTAAGCTATTTGGAGCTAAAAAGCCACTTGTAATTACATCAAATTATACCTACACTGCATATGATATCGCAAGGTTTCTTAATGATATTGGGTTTTCGCAAGGTGTTGTTCCTTACAAGACTCGGATTTTGCCTTTGGTTGAAGATTTGGTAGCGCCTAAAGTGCCGGTTACTTGTATAATTGGGAGTGGTGTTAAGACACCAGAGACTTTATTTTATGGTGTAGGCGGGTTCGATAAGCAGCCGGATATTGTGCATGGGGATGGGGATGGAACTGTGAATATGGTGAGCTTATTAAGTGTTGAAGTGGAATGGGCTAAAGAGAAGAATCAAACACTCAAGATGATTAAAATTCCTGGTGTTTCCCATAGTTCTATACTTAAAGATGATGATGCTCTTGTCGAAATAGTTAGAGAAATCTGTTCTATCAATTCTAACAGCATCAGAGCAGTTTTCTGA

Network for GWHGAAZE014185

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02450.16	LCAT	71	307	3.50E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06129	LYPLA3	Glycerophospholipid metabolism	map00564
K06129	LYPLA3	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0008374	molecular_function	O-acyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.850
	SRR3591706	second leaf	25.595
	SRR3591707	mature leaf	22.461
	SRR3591708	Shoot apex	11.845
	SRR3591709	Stem	3.302
	SRR3591710	White floral bud	12.290
	SRR3591711	White flower	4.927
	SRR3591712	Green floral bud	17.046
	SRR3591713	Yellow flower	9.999
SRP173429	SRR8316895	Juvenile bud stage	10.573
	SRR8316896	Juvenile bud stage	23.272
	SRR8316897	Juvenile bud stage	14.558
	SRR8316894	Third green stage	11.213
	SRR8316900	Third green stage	38.439
	SRR8316901	Third green stage	45.124
	SRR8316898	Complete white stage	5.955
	SRR8316899	Complete white stage	10.981
	SRR8316903	Complete white stage	8.504
	SRR8316902	Silver flowering stage	5.179
	SRR8316904	Silver flowering stage	8.575
	SRR8316905	Silver flowering stage	5.148
	SRR8316906	Gold flowering stage	16.609
	SRR8316907	Gold flowering stage	13.612
	SRR8316908	Gold flowering stage	14.995
SRP132670	SRR6706286	Control	51.672
	SRR6706287	Light intensity 50%	43.783
	SRR6706288	Light intensity 20%	41.399
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	61.001
	CNS0095593	Slightly white alabastrum(diploid) 2	51.529
	CNS0095594	Slightly white alabastrum(diploid) 3	67.149
	CNS0095595	Whole white alabastrum(diploid) 2	121.156
	CNS0095596	Whole white alabastrum(diploid) 3	145.218
	CNS0095597	Whole white alabastrum(diploid) 4	163.663
	CNS0095598	Silvery flower (diploied) 1	12.119
	CNS0095599	Silvery flower (diploied) 2	18.501
	CNS0095600	Silvery flower (diploied) 3	10.197
	CNS0095601	Golden flower (diploid) 1	10.271
	CNS0095602	Golden flower (diploid) 2	14.428
	CNS0095603	Golden flower (diploid) 3	12.611
	CNS0095604	Slightly white alabastrum(tetraploid) 1	98.609
	CNS0095605	Slightly white alabastrum(tetraploid) 2	110.875
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.373
	CNS0095607	Whole white alabastrum(tetraploid) 1	124.456
	CNS0095608	Whole white alabastrum(tetraploid) 2	98.122
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.430
	CNS0095610	Silvery flower (tetraploid) 1	7.532
	CNS0095611	Silvery flower (tetraploid) 2	14.611
	CNS0095612	Silvery flower (tetraploid) 3	13.209
	CNS0095613	Golden flower (tetraploid) 1	9.385
	CNS0095614	Golden flower (tetraploid) 2	12.205
	CNS0095615	Golden flower (tetraploid) 3	19.019
CRA001975	CRR073297	Stem 1	17.982
	CRR073298	Stem 2	22.068
	CRR073299	Stem 3	17.342
	CRR073300	Leaf 1	46.844
	CRR073301	Leaf 2	34.546
	CRR073302	Leaf 3	18.352
	CRR073303	Juvenile bud 1	30.432
	CRR073304	Juvenile bud 2	28.000
	CRR073305	Juvenile bud 3	6.499
	CRR073306	Third green 1	16.346
	CRR073307	Third green 2	19.533
	CRR073308	Third green 3	16.571
	CRR073309	Second white 1	7.631
	CRR073310	Second white 2	5.433
	CRR073311	Second white 3	5.201
	CRR073312	Silver flowering 1	15.628
	CRR073313	Silver flowering 2	15.505
	CRR073314	Silver flowering 3	11.147
	CRR073315	Gold flowering 1	26.289
	CRR073316	Gold flowering 2	21.630
	CRR073317	Gold flowering 3	34.719
	CRR073318	Tawny withering 1	15.132
	CRR073319	Tawny withering 2	16.247
	CRR073320	Tawny withering 3	14.411