Gene detail

Detail information of GWHGAAZE014182

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010273182.1	0	PREDICTED: 70 kDa peptidyl-prolyl isomerase-like isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q38931\|FKB62_ARATH	0	Peptidyl-prolyl cis-trans isomerase FKBP62
trEMBL	tr\|A0A061FEG8\|A0A061FEG8_THECC	0	FKBP-type peptidyl-prolyl cis-trans isomerase family protein {ECO:0000313\|EMBL:EOY15685.1}
TAIR10	AT3G25230.1	1E-153	rotamase FKBP 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7327768	7331931	-
GWHAAZE00000004	mRNA	7327768	7331931	-
GWHAAZE00000004	exon	7331712	7331931	-
GWHAAZE00000004	exon	7331494	7331580	-
GWHAAZE00000004	exon	7331074	7331331	-
GWHAAZE00000004	exon	7330877	7330957	-
GWHAAZE00000004	exon	7330699	7330779	-
GWHAAZE00000004	exon	7330418	7330612	-
GWHAAZE00000004	exon	7329855	7329944	-
GWHAAZE00000004	exon	7329526	7329701	-
GWHAAZE00000004	exon	7328964	7329086	-
GWHAAZE00000004	exon	7328729	7328875	-
GWHAAZE00000004	exon	7328493	7328620	-
GWHAAZE00000004	exon	7328270	7328390	-
GWHAAZE00000004	exon	7327768	7327893	-
GWHAAZE00000004	CDS	7331712	7331931	-
GWHAAZE00000004	CDS	7331494	7331580	-
GWHAAZE00000004	CDS	7331074	7331331	-
GWHAAZE00000004	CDS	7330877	7330957	-
GWHAAZE00000004	CDS	7330699	7330779	-
GWHAAZE00000004	CDS	7330418	7330612	-
GWHAAZE00000004	CDS	7329855	7329944	-
GWHAAZE00000004	CDS	7329526	7329701	-
GWHAAZE00000004	CDS	7328964	7329086	-
GWHAAZE00000004	CDS	7328729	7328875	-
GWHAAZE00000004	CDS	7328493	7328620	-
GWHAAZE00000004	CDS	7328270	7328390	-
GWHAAZE00000004	CDS	7327768	7327893	-

Transcript Sequence
>GWHTAAZE014196 ATGGTTGTAGAAGAAGAAGAAAAGAAAGGGACCAACGTGTCGGACGTTGGGGACGAAGACGGGCTGGAGGAAGAACCGGGGGAGGTAATCGAATCAGCACCCCCTCTCAAAGTCGGTGAAGAAAGACAAATCAACTCTCCTTCAGGTTCAGCCCTCAAGAAGAAACTCCTCAAACGCGGCCTTGGCTGGGAAACCCCTGAATTTGGCGATGAAGTCACTGTACACTATGTGGGGACTTTACTTGATGGATCAGAGTTTGATTCCACCAGAGATAGACACCAACATTTCACGTTCAAGGTTGGCCATGGCCAAGTAGTTTCTGGTTTTGATCATGGGCTTTTTACCATGAAAAAGGGCGAAATTTCGTTGTTCACAATACCTCCTGAATTGGGGTACGGAGAAACAGGCACATTTGCTGTTCCTCCGAATTCCATTGTTCAGTTTGAAGTAGAACTTGTCTCGTGGATCACAGTGGTTGATTTATGCAAAGATGGTGGAATTATCAAGAGAATTCTGGAGAAAGGGGAACAGAGTGGGCAACCCAGTGATCTTGATGAAGTTCTAGTGAAGTATACAGTAATGCTGGTTGATGGTGTTATTATTGCGAAAACTCCAGAAGAGGGAGTCGAGTTTTATGTTAAAGATGGTCATCTATTTCCAGCATTGACGAAAGCAATCAAGACCATGAGAAAGGGGGAGAAAGTCAATCTCATAGTTCAACCTCAATATTCCTTTGGAGAGGGTGATAAGGATCGTGTTAAGGGTTTACCCTCAATCCCGCCGAGTTCTGCGCTAAGCATTGATCTGGAGCTGGTGTCTTTCAAGTCTGTAATTAATGTTACTGGCGATTTCAAGGTTATGAAAAAGATCTTAAAGGAAGGGGAAGGGGCTCTCACTGCAAATGAGGGTGCTTCAGTTACTATTAGGTATACAGCTAAGCTAGAAGATGGCACTATATTCGAGAGAAATGGTGTTGATGGAGGGATGCCATTGGAGTTCATTACAGATGAAGAACAAGTTATTGCTGGCCTAGATCGGGCAGCGGCAACAATGAAGAAAGGGGAATGCGCAATATTGACAATAACTCCTGAATATGGATTTGGAAGTGCTGAAGTAAAGCGTGATCTTGCTGTTGTTCCACCATTTTCAAAAATCATCTATGAAGTTGACATGTTGGATTTTATGAAGGAGAAAGCTCCCTGGGAGATGAGTAATCATGAGAGAATCAAGGCAGCTGGGATGAAGAAAGAAGAAGGTAACACACTATTTAAAAATGTGAAGTATCAAAGAGCTGCAAAAAAATATGACAAGGCTGCCGATTATGTGGGGGAAGATGGATCCTTTGAAGATAAAGATCAAAAGCTTGTAAAATCATTAAGAGTGTCATGTTGGTTGAACAGTGCAGCTTGTAGCCTCAAACTGAATGATTTCCAAGGAGCAATAAAGCTATGTTCAAAGGTACTAGATGTTGAGTTCTATAATGTGAAAGCTTTGTACAGGCGGGCTCAAGCTTACATGGAAACTGCAGATTTACACTCGGCCGAATTGGACATCAAGAAGGCCCTGGAGGCTGATCCTAACAACAAGGATGTCAAATCAATTCAAAAGCGTTTGAAACAACTCCAAGCCGAGAGCAACAAGAGAGATGCAAACCTCTATGCAAATATGTTCGTACACATGAACAAAGACACTTATGTGGCAACAAAGAGAATGAAGATCGAGGTAGTGGAAGAGAACAAGAAAGATGAAGCCGTGATGGCAATGGAGATGGAAAGGGTTGCTGTGAGTTCGGGTCTTCATGACAACAAAATGGTGGTTGATTATTCCTCTTGA

Network for GWHGAAZE014182

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00254.29	FKBP_C	64	153	6.90E-27
PF00254.29	FKBP_C	181	272	5.10E-11
PF00254.29	FKBP_C	299	391	1.50E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09571	FKBP4_5	Estrogen signaling pathway	map04915

Gene Ontology

GO term	Ontology	Name
GO:0003755	molecular_function	peptidyl-prolyl cis-trans isomerase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.074
	SRR3591706	second leaf	12.594
	SRR3591707	mature leaf	10.267
	SRR3591708	Shoot apex	18.529
	SRR3591709	Stem	15.484
	SRR3591710	White floral bud	16.297
	SRR3591711	White flower	13.927
	SRR3591712	Green floral bud	13.913
	SRR3591713	Yellow flower	10.844
SRP173429	SRR8316895	Juvenile bud stage	9.705
	SRR8316896	Juvenile bud stage	14.097
	SRR8316897	Juvenile bud stage	7.828
	SRR8316894	Third green stage	6.646
	SRR8316900	Third green stage	18.728
	SRR8316901	Third green stage	14.656
	SRR8316898	Complete white stage	6.883
	SRR8316899	Complete white stage	21.504
	SRR8316903	Complete white stage	13.708
	SRR8316902	Silver flowering stage	6.662
	SRR8316904	Silver flowering stage	7.584
	SRR8316905	Silver flowering stage	5.299
	SRR8316906	Gold flowering stage	17.141
	SRR8316907	Gold flowering stage	15.699
	SRR8316908	Gold flowering stage	15.372
SRP132670	SRR6706286	Control	13.933
	SRR6706287	Light intensity 50%	13.621
	SRR6706288	Light intensity 20%	15.647
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.331
	CNS0095593	Slightly white alabastrum(diploid) 2	11.107
	CNS0095594	Slightly white alabastrum(diploid) 3	7.526
	CNS0095595	Whole white alabastrum(diploid) 2	7.547
	CNS0095596	Whole white alabastrum(diploid) 3	7.262
	CNS0095597	Whole white alabastrum(diploid) 4	7.804
	CNS0095598	Silvery flower (diploied) 1	13.220
	CNS0095599	Silvery flower (diploied) 2	11.277
	CNS0095600	Silvery flower (diploied) 3	12.711
	CNS0095601	Golden flower (diploid) 1	13.016
	CNS0095602	Golden flower (diploid) 2	12.404
	CNS0095603	Golden flower (diploid) 3	12.908
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.604
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.581
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.077
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.968
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.690
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.439
	CNS0095610	Silvery flower (tetraploid) 1	14.026
	CNS0095611	Silvery flower (tetraploid) 2	14.159
	CNS0095612	Silvery flower (tetraploid) 3	19.731
	CNS0095613	Golden flower (tetraploid) 1	9.915
	CNS0095614	Golden flower (tetraploid) 2	12.637
	CNS0095615	Golden flower (tetraploid) 3	8.330
CRA001975	CRR073297	Stem 1	15.560
	CRR073298	Stem 2	15.585
	CRR073299	Stem 3	13.942
	CRR073300	Leaf 1	20.266
	CRR073301	Leaf 2	14.470
	CRR073302	Leaf 3	11.845
	CRR073303	Juvenile bud 1	11.401
	CRR073304	Juvenile bud 2	7.919
	CRR073305	Juvenile bud 3	7.342
	CRR073306	Third green 1	3.988
	CRR073307	Third green 2	3.103
	CRR073308	Third green 3	4.359
	CRR073309	Second white 1	2.947
	CRR073310	Second white 2	7.321
	CRR073311	Second white 3	6.310
	CRR073312	Silver flowering 1	3.684
	CRR073313	Silver flowering 2	2.591
	CRR073314	Silver flowering 3	4.523
	CRR073315	Gold flowering 1	6.453
	CRR073316	Gold flowering 2	10.271
	CRR073317	Gold flowering 3	4.148
	CRR073318	Tawny withering 1	9.210
	CRR073319	Tawny withering 2	8.253
	CRR073320	Tawny withering 3	12.282