Gene detail

Detail information of GWHGAAZE014165

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283302.1	7.6117E-100	PREDICTED: transcription factor bHLH84 [Vitis vinifera]
Swissprot	tr\|Q84WK0\|BH085_ARATH	3E-61	Transcription factor bHLH85
trEMBL	tr\|A5B2R9\|A5B2R9_VITVI	4E-100	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN71946.1}
TAIR10	AT4G33880.1	3E-36	ROOT HAIR DEFECTIVE 6-LIKE 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7023962	7025592	+
GWHAAZE00000004	mRNA	7023962	7025592	+
GWHAAZE00000004	exon	7023962	7024615	+
GWHAAZE00000004	exon	7024767	7025024	+
GWHAAZE00000004	exon	7025128	7025193	+
GWHAAZE00000004	exon	7025321	7025386	+
GWHAAZE00000004	exon	7025500	7025592	+
GWHAAZE00000004	CDS	7023962	7024615	+
GWHAAZE00000004	CDS	7024767	7025024	+
GWHAAZE00000004	CDS	7025128	7025193	+
GWHAAZE00000004	CDS	7025321	7025386	+
GWHAAZE00000004	CDS	7025500	7025592	+

Transcript Sequence
>GWHTAAZE014179 ATGGAATCTGTGGGTGTTTTTCTTAATGAAGAATGGGAATCTTTGAGCAGAATGTTCTCTACTGATCAAGAAGCTGATTTCGCCTTGCAGTTCATCGGCCACGACCTTTTTCCATCAACATTTTCTATCAATGATGAAACTGCCAATTATAATACAAACATGGCTGCTGGGATTGATCATGAGAGTAATTTGTACATTAATTCTTCTGACACTCTTGACGCTACTAATTTATTTTATTTTTCTCAAGAAAGTAGCAATAGCAGTGGTAGCAATAATAGTTCCCCTTTTCCCACTCCCGCCTACGAAAACCACCACTATTTCTCTGATTCTAATCTTCTTCCACTAGTTCAACCAAATAATATGTCCGAGTCCATGGATTTTTCTGTAATGGACGACAATAATCATAACAACGCGTTATTAGCCCATGTTTTTTCTACTGATCATCTCATGGAAGATAGTCCTCTCTACCTCAAAGAAGAGATGGGCAATAATGGCAATATGGAGAATTCACTTACTCTTCAAGAGGACATTAACGATCAGACCAAGGAAGCGCAGCTCAAAAGGAAGTTTGAACAGCCCGGACCACCAGAGGATAATAAGATCAATGTCGAGTTATCTGAGAATCCCAAGAAGAAACCTCGGGTTTCAAGAGAGTCACAAAAGAACAAAAAGAAAGCAGAGCCGAAGAAGAACCAGAAGCTCACTGCGAATGGTAACAATGGAGAAGAGACTAATTTGGTAGCGAATGGACAAAGCTCGAGTTGTTACAGCTCGGAAGATGACTCAAATGGTTCTCAGGAGCTAAATGGAGGAGCCATTTCAGACTCTAAAGCGCCCGTAGCTCTCAACTCCAATGGCAAAGGCAGAGCCAGTAGAGGCTCTGCCACTGATCCCCAAAGCCTCTATGCTAGGAAAAGGAGAGAGAGAATAAATGAGAGATTGAGAATCCTACAGAATCTTGTACCAAATGGAACAAAGGTTGACATTAGCACAATGCTTGAAGAGGCAGTCCATTATGTCAAGTTTTTGCAGCTTCAAATTAAGTTACTGAGCTCTGATGATTTATGGATGTACGCTCCGATTGCATACAATGGAATGGATATGGGTCTCTACCAGAAGATTTCTCCAACTCAATGA

Network for GWHGAAZE014165

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	304	344	1.90E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	1.602
	SRR3591707	mature leaf	0.106
	SRR3591708	Shoot apex	0.082
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.494
	SRR3591712	Green floral bud	0.090
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.076
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.320
	SRR8316904	Silver flowering stage	0.212
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.036
	SRR8316907	Gold flowering stage	0.183
	SRR8316908	Gold flowering stage	0.112
SRP132670	SRR6706286	Control	0.056
	SRR6706287	Light intensity 50%	0.021
	SRR6706288	Light intensity 20%	0.078
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.071
	CNS0095593	Slightly white alabastrum(diploid) 2	0.070
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.177
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.094
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.077
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.092
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.240
	CNS0095610	Silvery flower (tetraploid) 1	0.048
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.035
	CNS0095613	Golden flower (tetraploid) 1	0.016
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.043
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.481
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.205
	CRR073306	Third green 1	0.280
	CRR073307	Third green 2	0.166
	CRR073308	Third green 3	0.162
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.108
	CRR073316	Gold flowering 2	0.042
	CRR073317	Gold flowering 3	0.422
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.003
	CRR073320	Tawny withering 3	0.000